PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.18G206600.1.p
Common NameDREB2D2, GLYMA_18G206600, Glyma18g43750, LOC100500303
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ERF
Protein Properties Length: 528aa    MW: 58439.1 Da    PI: 6.1214
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.18G206600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.53.3e-1874131155
                  AP2   1 sgykGVrwdkkrgrWvAeIrdpseng.....krkrfslgkfgtaeeAakaaiaarkkleg 55 
                          ++++GVr++  +g+WvAeIr+p + g     k  r +lg+f ta eAa a+++a+k+l+g
  Glyma.18G206600.1.p  74 CKFRGVRQRI-WGKWVAEIREPIN-GklvgeKANRLWLGTFSTALEAALAYDEAAKALYG 131
                          79*****998.**********855.55976666************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008478.5E-1374131IPR001471AP2/ERF domain
CDDcd000181.00E-2874138No hitNo description
Gene3DG3DSA:3.30.730.101.9E-2675140IPR001471AP2/ERF domain
PROSITE profilePS5103221.07475139IPR001471AP2/ERF domain
SMARTSM003801.2E-3175145IPR001471AP2/ERF domain
SuperFamilySSF541711.7E-1775141IPR016177DNA-binding domain
PRINTSPR003672.5E-87687IPR001471AP2/ERF domain
PRINTSPR003672.5E-8105121IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 528 aa     Download sequence    Send to blast
MKTNNNVSGE RKSRKRRNGG SDYVEDTLEK WKEYNRQQQL GSRENGVEVI HKAPAKGSRK  60
GCMRGKGGPQ NSDCKFRGVR QRIWGKWVAE IREPINGKLV GEKANRLWLG TFSTALEAAL  120
AYDEAAKALY GPCARLNFSE SIDSNGSSSS SGSDKKSPSG FSENGCDVAK AEELEVNRHR  180
CHEEKPRFSK VGVFEETEEK PILSGGCVAD DSIEELKEIT TGFEQCQTSE ECMATTLKNV  240
KSEVPGESEE MERELEEVVK NSGIGGEVNH LRKEPMDIAM NARGNYCSSP GSSDAATEHE  300
ILLKSEETRG ESVETLNSCE LSCSNHCLGF MHNNMLPDTN LRPNPEASIA KKHTEEVISE  360
ILGLCQGKCL KISHGQSPNE QFRRSEHFDE MKTRLKGLEC KLRAHSIHYK NQAPIVGDSN  420
HPSMQGIHLF GGGTVGPIES MSQVEALNNI NTNRNSLPGF SSGHGRKLCD LSQQLHKLGG  480
YLPEHWNSVQ FPDLEVGHDY SFLNPDYDFG LYEEQKLLDI CFPHVGS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-11751381471Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.4870.0somatic embryo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.18G206600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX4403890.0JX440389.1 Glycine max DRE-binding protein 2D;2 (DREB2D;2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001267497.10.0uncharacterized protein LOC100500303
RefseqXP_028213306.10.0uncharacterized protein LOC114395673
TrEMBLA0A445FVJ50.0A0A445FVJ5_GLYSO; Dehydration-responsive element-binding protein 2A
TrEMBLK0H6H60.0K0H6H6_SOYBN; DRE-binding protein 2D2
STRINGGLYMA18G43750.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF132862127
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40340.16e-29ERF family protein
Publications ? help Back to Top
  1. Mizoi J, et al.
    GmDREB2A;2, a canonical DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN2-type transcription factor in soybean, is posttranslationally regulated and mediates dehydration-responsive element-dependent gene expression.
    Plant Physiol., 2013. 161(1): p. 346-61
    [PMID:23151346]