PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.18G003600.1.p
Common NameGLYMA_18G003600
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C2H2
Protein Properties Length: 357aa    MW: 41102.9 Da    PI: 9.3403
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.18G003600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.35.7e-05142165123
                          EEETTTTEEESSHHHHHHHHHH.T CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                          y+C+ Cg+ F +++ L++H +  H
  Glyma.18G003600.1.p 142 YRCKVCGRKFHTNDKLVNHFKQlH 165
                          9******************98766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.10101.2E-760161IPR029060PIN domain-like
SuperFamilySSF576675.98E-7138168No hitNo description
SMARTSM003550.004142165IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.133142170IPR007087Zinc finger, C2H2
PROSITE patternPS000280144165IPR007087Zinc finger, C2H2
CDDcd061678.20E-15159283No hitNo description
PfamPF019362.2E-8214284IPR021139NYN domain, limkain-b1-type
Gene3DG3DSA:3.40.50.10101.2E-7227282IPR029060PIN domain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MVSFTSYFIY RRAENPLQIL KFRCTFFFSP ETTSWQTYGA LRYCHSGSEC GKNPKLTPNE  60
KPNRVGLFWD LDNKPPNSIP PYEVANKLRI AASSFGVVRY MAAYANSHTF SHVPQGVREI  120
RKEKELLYRL ENKGVIKPNQ PYRCKVCGRK FHTNDKLVNH FKQLHEREHA KRMNQIESSR  180
GSRRVKLVAK YSMKMEKYKK AASDILTPKV GYGLADELRR AGFWVQTVSD KPQAADQALQ  240
SHIVDIMDHR RVECVVLVSD DSDFVDVINE AKMRCLKTVV IGDIDDGFLK RTADTAFSWE  300
EILMGKAKKQ AVSVVKNWKD RDILKRLEWT YNPDEDKNNF SLDDAITEAS EDDNID*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.18G003600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025982423.10.0uncharacterized protein LOC100789840
RefseqXP_028213189.10.0uncharacterized protein LOC114395572
TrEMBLA0A0B2QRL40.0A0A0B2QRL4_GLYSO; Uncharacterized protein
TrEMBLK7MP670.0K7MP67_SOYBN; Uncharacterized protein
STRINGGLYMA18G00680.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF75002533
Representative plantOGRP30481420
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G12240.11e-131C2H2 family protein