PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.17G175500.1.p
Common NameGLYMA_17G175500, LOC100819237
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family B3
Protein Properties Length: 481aa    MW: 54328.8 Da    PI: 7.3009
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.17G175500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B358.41.3e-18119209199
                          EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                          f+k l++s+v +  ++ lp +f+++h  +  +++t +ledesg+++  k+i +k++    l++GW++F   ++L egD+vvF+l++ ++f
  Glyma.17G175500.1.p 119 FVKSLVRSHVASCFWMGLPVSFCKRHLPD--KDTTFILEDESGKEYMTKYIACKTG----LSAGWRQFSAVHKLHEGDVVVFQLVEPTKF 202
                          89************************534..5679***************777776....***********************9876666 PP

                          ..EEEEE-S CS
                   B3  91 elvvkvfrk 99 
                            +v ++r+
  Glyma.17G175500.1.p 203 --KVYIIRA 209
                          ..9999886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.106.3E-22112210IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.75E-23113210IPR015300DNA-binding pseudobarrel domain
CDDcd100171.83E-26117208No hitNo description
SMARTSM010194.0E-23119210IPR003340B3 DNA binding domain
PfamPF023626.5E-16119209IPR003340B3 DNA binding domain
PROSITE profilePS5086313.028119210IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 481 aa     Download sequence    Send to blast
MVVIDEKNRV IRRDMVELSQ HDQSVTVAYY GEELHGGVPL PRFSRMSPLN TDRQNKGMEN  60
KYKLLNSPVK QATPAEAQKF ASSIKVATEG TSSRGQAMSS AVLQAEEVQS NLEREFPSFV  120
KSLVRSHVAS CFWMGLPVSF CKRHLPDKDT TFILEDESGK EYMTKYIACK TGLSAGWRQF  180
SAVHKLHEGD VVVFQLVEPT KFKVYIIRAN NTRELDGAFL SLDSCIKQKM GGNDNADSDD  240
VACNNSKRKH GKSVQQDVQT KKKASASRLR PKARPSVEQS ENDSEEALSE VMEGFKMLEF  300
NDVKGFENFS IIVDGVPIDA EFSTEVRNKY YRLCCSQHAF LHENLIKGMN YKLIAGIILE  360
TVNIADAIEV SVICTPRAEF SNWDKTLLAF EHLGMDVEFL RVRLRRLARI AYEKDDASET  420
KKHLAYRNEY SRADDEIKNM EAKLEELKGA CNGFGAYLES LKCRAESNHI KFQKEVVAPW  480
*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.191510.0hypocotyl| leaf| root| somatic embryo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.17G175500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003551033.10.0B3 domain-containing protein Os01g0234100
RefseqXP_028211409.10.0B3 domain-containing protein Os01g0234100-like
TrEMBLA0A445G8250.0A0A445G825_GLYSO; B3 domain-containing protein isoform A
TrEMBLK7MM660.0K7MM66_SOYBN; Uncharacterized protein
STRINGGLYMA17G20175.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF10073398
Representative plantOGRP7667818
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.14e-35B3 family protein