PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.16G152700.1.p
Common NameGLYMA_16G152700, LOC100776805
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family GATA
Protein Properties Length: 280aa    MW: 31134.1 Da    PI: 8.1064
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.16G152700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA53.82.6e-17204238135
                 GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                          C++C +  Tp+WR gp g+ktLCnaCG++y++ +l
  Glyma.16G152700.1.p 204 CTHCLAQRTPQWRAGPLGPKTLCNACGVRYKSGRL 238
                          *******************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004015.1E-15198252IPR000679Zinc finger, GATA-type
SuperFamilySSF577169.03E-15200262No hitNo description
Gene3DG3DSA:3.30.50.101.3E-13202236IPR013088Zinc finger, NHR/GATA-type
PROSITE profilePS5011411.108202234IPR000679Zinc finger, GATA-type
CDDcd002029.17E-11203250No hitNo description
PfamPF003205.4E-15204238IPR000679Zinc finger, GATA-type
PROSITE patternPS003440204229IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0030154Biological Processcell differentiation
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0000977Molecular FunctionRNA polymerase II regulatory region sequence-specific DNA binding
GO:0001085Molecular FunctionRNA polymerase II transcription factor binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0003682Molecular Functionchromatin binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MDMDVCRNIS VSSSECQQEL PTLDDLFCHQ NTEVDFGMEW LSVFVEDCFS SRPSCLLPPS  60
GGGVQTTSTS TKPSSGTIMP RPQQSHHCPL QNFAVPGKAR SKRKRLSAPR TTKHTLSTWS  120
QHFSSQNDGV SSDPPLLKQA YWLADSELIV PKKKDVEQEE GVVVVVKKEK LGDYYDDDEG  180
DEVNNNNTNN NNNDNVQHPI PRRCTHCLAQ RTPQWRAGPL GPKTLCNACG VRYKSGRLLP  240
EYRPAKSPTF VSYLHSNSHK KVMEMRMGVG VAVLSTDKK*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.425900.0flower
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.16G152700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0892500.0BT089250.1 Soybean clone JCVI-FLGm-1B13 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003548060.10.0GATA transcription factor 9
TrEMBLI1MNT70.0I1MNT7_SOYBN; Uncharacterized protein
STRINGGLYMA16G26870.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF84872444
Representative plantOGRP6817287
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60530.11e-34GATA transcription factor 4