PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.16G053900.1.p

Common Name

GLYMA_16G053900, LOC100778951

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

TCP

Protein Properties

Length: 346aa MW: 36798.6 Da PI: 9.5511

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.16G053900.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	126.7	2.4e-39	66	157	2	98
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssgkaa 91 a+k+++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++ti+WLlqqa+p+i+++tgt++++as+ a+ +s s ++ s +++ Glyma.16G053900.1.p 66 APKRSSNKDRHTKVEGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQAEPSIIAATGTGTIPASALAAAGNSLSPQAASLSSS- 154 789******************************************************************77744444444442222211. PP TCP 92 ksaaksk 98 ++ Glyma.16G053900.1.p 155 ----LHQ 157 ....111 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	4.7E-32	71	158	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	28.016	72	126	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 346 aa Download sequence Send to blast
MDPKGSKQQP QQSQEVVPNF LSLPQQQQGN TNNNNMGENK PAEVKDFQIV VAENKEESKK 60 QQQQLAPKRS SNKDRHTKVE GRGRRIRMPA LCAARIFQLT RELGHKSDGE TIQWLLQQAE 120 PSIIAATGTG TIPASALAAA GNSLSPQAAS LSSSLHQHQQ KIDELGGSGG SSSRASWQMV 180 GGNLGRPHLG VGVATAAGLW PPHVSGFGFQ TPPTTTTPTT TTSSSGPSNA TLATESSNYL 240 QKIAFPGFDL PTSATNMMGH MSFTSILGGG GGGGAQHMPG LELGLSQDGH IGVLNQQALN 300 QIYQQMNQAG RVHHHQHQHH HQHHQQQQHH QQTPAKDDSQ GSGGQ*

Sequence ? help Back to Top

Protein Sequence Length: 346 aa Download sequence Send to blast

MDPKGSKQQP QQSQEVVPNF LSLPQQQQGN TNNNNMGENK PAEVKDFQIV VAENKEESKK  60
QQQQLAPKRS SNKDRHTKVE GRGRRIRMPA LCAARIFQLT RELGHKSDGE TIQWLLQQAE  120
PSIIAATGTG TIPASALAAA GNSLSPQAAS LSSSLHQHQQ KIDELGGSGG SSSRASWQMV  180
GGNLGRPHLG VGVATAAGLW PPHVSGFGFQ TPPTTTTPTT TTSSSGPSNA TLATESSNYL  240
QKIAFPGFDL PTSATNMMGH MSFTSILGGG GGGGAQHMPG LELGLSQDGH IGVLNQQALN  300
QIYQQMNQAG RVHHHQHQHH HQHHQQQQHH QQTPAKDDSQ GSGGQ*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.23044	0.0	cotyledon\| hypocotyl\| leaf\| root\| seed coat\| stem

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds to the site II motif (3'-TGGGCC/T-5') in the promoter of PCNA-2 and to 3'-GCCCG/A-5' elements in the promoters of cyclin CYCB1-1 and ribosomal protein genes. {ECO:0000269\|PubMed:12631321, ECO:0000269\|PubMed:16123132}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.16G053900.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC235044	0.0	AC235044.1 Glycine max strain Williams 82 clone GM_WBb0005G15, complete sequence.
GenBank	AC235265	0.0	AC235265.1 Glycine max strain Williams 82 clone GM_WBb0041K04, complete sequence.
GenBank	AC236296	0.0	AC236296.1 Glycine max strain Williams 82 clone GM_WBb0094F23, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003549105.1	0.0	transcription factor TCP20
Refseq	XP_028207282.1	0.0	transcription factor TCP20-like
Swissprot	Q9LSD5	8e-76	TCP20_ARATH; Transcription factor TCP20
TrEMBL	A0A0B2R2K6	0.0	A0A0B2R2K6_GLYSO; Transcription factor TCP20
TrEMBL	I1MLF5	0.0	I1MLF5_SOYBN; Uncharacterized protein
STRING	GLYMA16G05840.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3339	32	69
Representative plant	OGRP922	14	59

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G27010.1	2e-62	TCP family protein

Link Out ? help Back to Top
Phytozome	Glyma.16G053900.1.p
Entrez Gene	100778951

Publications ? help Back to Top
Zhu P, et al. Arabidopsis small nucleolar RNA monitors the efficient pre-rRNA processing during ribosome biogenesis. Proc. Natl. Acad. Sci. U.S.A., 2016. 113(42): p. 11967-11972 [PMID:27708161] Wu JF, et al. LWD-TCP complex activates the morning gene CCA1 in Arabidopsis. Nat Commun, 2016. 7: p. 13181 [PMID:27734958] Guan P, et al. Interacting TCP and NLP transcription factors control plant responses to nitrate availability. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(9): p. 2419-2424 [PMID:28202720] Guan P Dancing with Hormones: A Current Perspective of Nitrate Signaling and Regulation in Arabidopsis. Front Plant Sci, 2017. 8: p. 1697 [PMID:29033968] Zhang N, et al. MOS1 functions closely with TCP transcription factors to modulate immunity and cell cycle in Arabidopsis. Plant J., 2018. 93(1): p. 66-78 [PMID:29086441] Bresso EG,Chorostecki U,Rodriguez RE,Palatnik JF,Schommer C Spatial Control of Gene Expression by miR319-Regulated TCP Transcription Factors in Leaf Development. Plant Physiol., 2018. 176(2): p. 1694-1708 [PMID:29133375] Konishi N,Okubo T,Yamaya T,Hayakawa T,Minamisawa K Nitrate Supply-Dependent Shifts in Communities of Root-Associated Bacteria in Arabidopsis. Microbes Environ., 2017. 32(4): p. 314-323 [PMID:29187692]