PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.15G071400.1.p | ||||||||
Common Name | GLYMA_15G071400, LOC100806358 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | Dof | ||||||||
Protein Properties | Length: 286aa MW: 31767.4 Da PI: 7.2688 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 110.8 | 6.6e-35 | 41 | 100 | 2 | 61 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 +++ lkcprCds ntkfCyynny+ sqPr++C+aC+r+WtkGG+lrnvPvGggr++++ + Glyma.15G071400.1.p 41 PSEPLKCPRCDSINTKFCYYNNYNKSQPRHYCRACKRHWTKGGTLRNVPVGGGRKNKRVK 100 67899***********************************************97766544 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 2.0E-19 | 34 | 89 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 4.0E-31 | 44 | 97 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 26.99 | 45 | 99 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 47 | 83 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 286 aa Download sequence Send to blast |
MGLSSKQVSN RGLDWNQTLL QAQNLELPNP PPMRKQQQTQ PSEPLKCPRC DSINTKFCYY 60 NNYNKSQPRH YCRACKRHWT KGGTLRNVPV GGGRKNKRVK KSTTPAIATT SISTSTSNAN 120 MDGELNNPIT IPSLAVDDHK TTPSSLYQYV CLPQQNLMST KDSEEGKDFG IGNGIFLSST 180 VPFPQSQSLL FPFTTSNSFD PNLCAISSSF RSSSVYNYGE EFKIMEEPTL NSIMPNTSGS 240 TNTQPWEIAA TSSGMEMSNY WTWEDIDSFV STDPNVPWDD SDIKP* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.37122 | 0.0 | epicotyl |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.15G071400.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | DQ857276 | 0.0 | DQ857276.1 Glycine max Dof25 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003545886.1 | 0.0 | dof zinc finger protein DOF3.4 | ||||
Refseq | XP_028202756.1 | 0.0 | dof zinc finger protein DOF3.4-like | ||||
TrEMBL | A0A445GQB2 | 0.0 | A0A445GQB2_GLYSO; Dof zinc finger protein DOF5.3 | ||||
TrEMBL | I1MEF1 | 0.0 | I1MEF1_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA15G07730.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5107 | 33 | 56 | Representative plant | OGRP38 | 17 | 445 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G51700.1 | 1e-24 | DOF zinc finger protein 1 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.15G071400.1.p |
Entrez Gene | 100806358 |