PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Glyma.15G033800.1.p | ||||||||
Common Name | GLYMA_15G033800, LOC100798932 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
|
||||||||
Family | Trihelix | ||||||||
Protein Properties | Length: 448aa MW: 50831 Da PI: 6.1756 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 68.5 | 1.3e-21 | 116 | 212 | 1 | 85 |
trihelix 1 rWtkqevlaLiearremeerlrrgk...........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrt.sessst 78 +Wt++ v++Li++++ ++++ g +kk++W+ vsk m +g+++sp+qC++k+++lnkryk+++++ +++t ++++++ Glyma.15G033800.1.p 116 KWTDNVVRLLITVVSCVGDDGTIGGmdchkrksgvlQKKGKWKTVSKIMIGKGCHVSPQQCEDKFNDLNKRYKRLNDILGRGTcCQVVEN 205 7**************888777765444466667777**********************************************85788888 PP trihelix 79 cpyfdql 85 ++ d++ Glyma.15G033800.1.p 206 PVLMDSM 212 8877777 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 6.0E-18 | 114 | 239 | No hit | No description |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 448 aa Download sequence Send to blast |
MNSSGLGGGF LSGPSGEILD LESPFHRHQH TQLGHPSITG QQHMNMMSGL ESDHPIGLIE 60 VKSLNAALNF GKGKAVAPSN SNELSEEDEP SYAEEGNCEN LDGGKSKKGS PWQRMKWTDN 120 VVRLLITVVS CVGDDGTIGG MDCHKRKSGV LQKKGKWKTV SKIMIGKGCH VSPQQCEDKF 180 NDLNKRYKRL NDILGRGTCC QVVENPVLMD SMPNLSAKMK DDVRKILSSK HLFYKEMCAY 240 HNGQRIPNSH ELDLQGYSLE HGRDSRDNNG SEDEDEDNND SEDDESDDEI NINAHEDGGR 300 MQQLCDRNKL SEEDVHFGPQ TSRMDKFEVE MARVFQDPTK SLHEQREWIK IQMLQLQEQN 360 ISYQAQALEL EKQRLKWLRY CSKKDRELEK LRLENKRMKL ENEHRILKLK QKELEADFST 420 SEMSLDPASL GINRPQGREH ISLGRQQ* |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Gma.29320 | 0.0 | meristem| somatic embryo| stem |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Glyma.15G033800.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AP015040 | 0.0 | AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_003547125.2 | 0.0 | uncharacterized protein LOC100798932 | ||||
TrEMBL | A0A0R0G3N1 | 0.0 | A0A0R0G3N1_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA15G03850.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF10546 | 32 | 40 | Representative plant | OGRP2796 | 13 | 29 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G76870.1 | 7e-73 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Glyma.15G033800.1.p |
Entrez Gene | 100798932 |