PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.15G032700.1.p | ||||||||
Common Name | GLYMA_15G032700, LOC100806368 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | bHLH | ||||||||
Protein Properties | Length: 413aa MW: 45760.2 Da PI: 7.7742 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 17.2 | 9.2e-06 | 345 | 370 | 6 | 30 |
HHHHHHHHHHHHHHHHHHHCTSCC.C CS HLH 6 nerErrRRdriNsafeeLrellPk.a 30 +++Er RR +i +++ +L++l+P+ + Glyma.15G032700.1.p 345 SIAERVRRTKISERMRKLQDLVPNmD 370 689********************965 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 9.096 | 339 | 390 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.88E-6 | 342 | 376 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 7.2E-6 | 344 | 376 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045944 | Biological Process | positive regulation of transcription from RNA polymerase II promoter | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0001046 | Molecular Function | core promoter sequence-specific DNA binding | ||||
GO:0001228 | Molecular Function | transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 413 aa Download sequence Send to blast |
MESDLEQQPQ VNSSGLTRYR SAPSSYFSNI IDREFYEHVF NRPSSPETER VFSRFVNSLN 60 SEEEDSLHHK LSTDSSSSAA VKEEVNQQDQ GINEEHVAVA ALQQSNNNIN NYNNNNNNNY 120 SASHNFYQSS SSKPPLPNQN PNLPSAMEQG SFSMGLRHSG NNSNLTRHSS SPAGLFSQIN 180 IENVYAGVRG MGSLGAVNNS IEDAKFSSSR RLKNQPNYSS SGRMSSIAEI GDKGYRESSP 240 DSEAFADGND FMAGFQVGHW DDTAMMSDNV GGLKRFSEED SKPFSGLNAV ETQNETGQTH 300 APLAHQLSLP NTSAEMAAIE KFLQFSDSVP CKIRAKRGCA THPRSIAERV RRTKISERMR 360 KLQDLVPNMD KTFKSKFRHF QIVMQSVRVH TRSNNNGKKG RLVDLACVSI SR* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.33277 | 0.0 | leaf| stem |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.15G032700.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT095435 | 0.0 | BT095435.1 Soybean clone JCVI-FLGm-25M5 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006597244.1 | 0.0 | transcription factor bHLH122 isoform X1 | ||||
TrEMBL | A0A0R0G6P4 | 0.0 | A0A0R0G6P4_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA15G03740.4 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4185 | 34 | 55 | Representative plant | OGRP511 | 15 | 80 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G51140.1 | 1e-51 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.15G032700.1.p |
Entrez Gene | 100806368 |