PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.15G029900.1.p
Common NameGLYMA_15G029900, LOC100806900
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family FAR1
Protein Properties Length: 295aa    MW: 33132.5 Da    PI: 9.5701
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.15G029900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR189.16.3e-28131218291
                 FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 
                          fYn+YAk+vGF +r+sk ++s+r+g+ + r +vC++eg+r ++k++  k  r+raetr+gC+a++ v+k ++gkw++tk+  eH+H+l+p
  Glyma.15G029900.1.p 131 FYNAYAKRVGFIIRVSKLSRSRRDGTAIGRALVCNREGYRMPDKRE--KIVRQRAETRVGCRAMILVRKVSSGKWVITKFIMEHTHPLTP 218
                          ******************************************9988..9**************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.3E-25131218IPR004330FAR1 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009585Biological Processred, far-red light phototransduction
GO:0010018Biological Processfar-red light signaling pathway
GO:0042753Biological Processpositive regulation of circadian rhythm
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MNLLLLSLHG TQKHKKFIFT ITVASYDYRI RVSLNSQSFV AAVEFGIDAS INGETVGNAT  60
IVQINSSTAD GNKVGCSSFN PAYKQGHDDN ITQDSSGGDT IPSGIPAVSV ASVDEPYVGQ  120
EFESEAAAHA FYNAYAKRVG FIIRVSKLSR SRRDGTAIGR ALVCNREGYR MPDKREKIVR  180
QRAETRVGCR AMILVRKVSS GKWVITKFIM EHTHPLTPGK GRRDCIYEQY PNEHDKIREL  240
SQQLAIERKR SATYKRHLEL IFEQIEEHND SLSKKIQHIV DSVKEMETKE QNQR*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.259280.0flower| leaf| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.15G029900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150400.0AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014623881.10.0protein FAR-RED ELONGATED HYPOCOTYL 3 isoform X2
TrEMBLI1MD620.0I1MD62_SOYBN; Uncharacterized protein
STRINGGLYMA15G03440.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24533072
Representative plantOGRP10299610
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G59470.26e-98FAR1 family protein