PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.14G084300.1.p
Common NameGLYMA_14G084300, LOC100785871
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family NAC
Protein Properties Length: 279aa    MW: 31253.3 Da    PI: 5.1194
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.14G084300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM83.93.1e-2691421128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkk..leleevikevdiykvePwdLp.k.....kvkaeekewyfFskrdkkyatgkrknratksgy 82 
                          lppG+rF P++e lv +yL+kk e+++  +  ++ i+e+d+y+++P +Lp +      +k+++k+w+ ++k+ k+    ++++r++ksg+
  Glyma.14G084300.1.p   9 LPPGYRFYPSEEVLVGYYLTKKNENREegFYGSDLIRELDLYDHDPFELPdAacfsyGYKGRKKHWFCYAKETKR----RNRKRKVKSGF 94 
                          79*********************999966566688**************95377754444455566666555443....34566789*** PP

                  NAM  83 Wkatgkdkevlsk.kgelvglkktLvfykg.rapkgektdWvmheyrl 128
                          W  +g+ ++++++ ++ +  + + +vfy g + +++ +tdW++ ey+l
  Glyma.14G084300.1.p  95 WLRKGRVRDICDNrDDVVLATMTRFVFYVGnSLKNAARTDWILYEYAL 142
                          ***********9844555678889****874668889*********87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.54E-316158IPR003441NAC domain
PROSITE profilePS5100533.5149158IPR003441NAC domain
PfamPF023654.2E-1510142IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MEDRAHAALP PGYRFYPSEE VLVGYYLTKK NENREEGFYG SDLIRELDLY DHDPFELPDA  60
ACFSYGYKGR KKHWFCYAKE TKRRNRKRKV KSGFWLRKGR VRDICDNRDD VVLATMTRFV  120
FYVGNSLKNA ARTDWILYEY ALVDRVLASF VLCRVVSKPP HQNSPSEIGL SCCAEESVGV  180
AVRQVGVQCD GCAESDVVEA KVCDDGFVNR ENEIAENPIR CGGEHGDPAA PVSVAPGSQP  240
ERLSGLPSGS ALFVEAMTSQ QLMLSIQEED FIELNDIA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-17515813165NO APICAL MERISTEM PROTEIN
1ut4_B2e-17515813165NO APICAL MERISTEM PROTEIN
1ut7_A2e-17515813165NO APICAL MERISTEM PROTEIN
1ut7_B2e-17515813165NO APICAL MERISTEM PROTEIN
3swm_A3e-17515816168NAC domain-containing protein 19
3swm_B3e-17515816168NAC domain-containing protein 19
3swm_C3e-17515816168NAC domain-containing protein 19
3swm_D3e-17515816168NAC domain-containing protein 19
3swp_A3e-17515816168NAC domain-containing protein 19
3swp_B3e-17515816168NAC domain-containing protein 19
3swp_C3e-17515816168NAC domain-containing protein 19
3swp_D3e-17515816168NAC domain-containing protein 19
4dul_A2e-17515813165NAC domain-containing protein 19
4dul_B2e-17515813165NAC domain-containing protein 19
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16988RKKHWFCYAKETKRRNRKRK
28288RRNRKRK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.2680.0hypocotyl| meristem| root| seed coat| somatic embryo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.14G084300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003545318.10.0NAC domain-containing protein 71
RefseqXP_028199019.10.0NAC domain-containing protein 71-like
TrEMBLA0A445H3P50.0A0A445H3P5_GLYSO; NAC domain-containing protein 30 isoform A
TrEMBLI1M8N80.0I1M8N8_SOYBN; Uncharacterized protein
STRINGGLYMA14G09240.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF130012628
Representative plantOGRP1150445
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32510.18e-24NAC domain containing protein 11