PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.14G066500.1.p
Common NameGLYMA_14G066500, LOC102660217
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C2H2
Protein Properties Length: 172aa    MW: 19474.7 Da    PI: 7.7608
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.14G066500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.45.3e-056385123
                         EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                         y+C+ C++ F++   L  H++ H
  Glyma.14G066500.1.p 63 YSCTFCTRDFKSAQALGGHMNIH 85
                         99*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.602.2E-46088IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.34E-66090No hitNo description
PROSITE profilePS5015710.9496390IPR007087Zinc finger, C2H2
PROSITE patternPS0002806585IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 172 aa     Download sequence    Send to blast
MEGSNDSQYW MYVKREQILK PQYSHLEAAV GDVINNNFSW EERAFAEDAA RLLGGSMWPQ  60
RSYSCTFCTR DFKSAQALGG HMNIHRRDRA RLKQNHHKND HFIKSLLLGS PNSEQEGVVK  120
AREYKFNGLG GSNYVETSLS VGTDFNVWAK NHHHQPFLVG TDSTIVAEAK E*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A9e-115885229superman protein
2l1o_A9e-115885229Transcriptional regulator SUPERMAN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.14G066500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025981325.13e-95zinc finger protein 11
TrEMBLK7M5B01e-127K7M5B0_SOYBN; Uncharacterized protein
STRINGGLYMA14G07221.11e-128(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17763078
Representative plantOGRP5761581
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37740.11e-26zinc-finger protein 10