PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Glyma.14G001700.1.p | ||||||||
Common Name | GLYMA_14G001700 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 156aa MW: 17589 Da PI: 8.5926 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 10.9 | 0.0014 | 27 | 46 | 2 | 21 |
EETTTTEEESSHHHHHHHHH CS zf-C2H2 2 kCpdCgksFsrksnLkrHir 21 +C+ Cgk F ++ L H+r Glyma.14G001700.1.p 27 PCTECGKKFWSWKALFGHMR 46 5******************8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13912 | 2.0E-7 | 26 | 50 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.39 | 26 | 48 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.02 | 26 | 48 | IPR015880 | Zinc finger, C2H2-like |
SuperFamily | SSF57667 | 1.83E-6 | 27 | 48 | No hit | No description |
PROSITE pattern | PS00028 | 0 | 28 | 48 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 5.0E-4 | 28 | 48 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 1.83E-6 | 92 | 119 | No hit | No description |
Pfam | PF13912 | 5.9E-13 | 97 | 121 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.058 | 97 | 124 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.71 | 97 | 119 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 99 | 119 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 156 aa Download sequence Send to blast |
MKRECGEASS CSRKKQKRLM EDAGARPCTE CGKKFWSWKA LFGHMRCHPE RHWRGINPPA 60 NVVRRQQEQE QMSQEDHEVA ASLLLLANSN VLESDGHKCS ICLRVFSTGQ ALGGHKRCHW 120 DSSSSKSLSV LDFDLNFPPP LTLDLSAYKY ESPNK* |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed in the germ cells following microspore division, increases during development and persists into mature pollen. {ECO:0000269|PubMed:24876252}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed exclusively in pollen. {ECO:0000269|PubMed:24876252}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Mediates the regulation of male germ cell division by DUO1. {ECO:0000269|PubMed:24876252}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Glyma.14G001700.1.p |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Activated by the transcription factor DUO1. {ECO:0000269|PubMed:21285328}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AP015036 | 2e-36 | AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006596577.1 | 1e-105 | zinc finger protein ZAT3 | ||||
Refseq | XP_028201014.1 | 1e-105 | zinc finger protein ZAT3-like | ||||
Swissprot | O65499 | 6e-31 | ZAT3_ARATH; Zinc finger protein ZAT3 | ||||
TrEMBL | A0A0R0GH00 | 1e-112 | A0A0R0GH00_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA14G00480.2 | 1e-104 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6667 | 7 | 10 | Representative plant | OGRP131 | 15 | 149 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G35280.1 | 1e-21 | C2H2-like zinc finger protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Glyma.14G001700.1.p |