PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.13G314600.1.p
Common NameGLYMA_13G314600
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family NAC
Protein Properties Length: 372aa    MW: 41950.9 Da    PI: 7.452
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.13G314600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM159.11.8e-49181441128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 
                          + pGfrF Ptdeel+++yL+kk+eg++ ++ +vi+ev+++k+ePwdLp k++ ++++ew+fFs+r +ky++g++++rat+ gyWkatgk+
  Glyma.13G314600.1.p  18 MFPGFRFCPTDEELISYYLRKKLEGHEESV-QVISEVELCKYEPWDLPaKSFIQSDNEWFFFSPRGRKYPNGSQSKRATECGYWKATGKE 106
                          579************************988.99***************667777899********************************* PP

                  NAM  90 kevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                          ++v+s +++ +g+k+tLvf+ grapkge+t+W+mhey +
  Glyma.13G314600.1.p 107 RNVKS-GSNIIGTKRTLVFHLGRAPKGERTEWIMHEYCI 144
                          *****.99*****************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.14E-5510159IPR003441NAC domain
PROSITE profilePS5100553.69718160IPR003441NAC domain
PfamPF023653.6E-2620143IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009845Biological Processseed germination
GO:0009938Biological Processnegative regulation of gibberellic acid mediated signaling pathway
GO:0033619Biological Processmembrane protein proteolysis
GO:0048573Biological Processphotoperiodism, flowering
GO:0071472Biological Processcellular response to salt stress
GO:0005634Cellular Componentnucleus
GO:0005886Cellular Componentplasma membrane
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    Send to blast
MMEGVSREAQ MSIAASSMFP GFRFCPTDEE LISYYLRKKL EGHEESVQVI SEVELCKYEP  60
WDLPAKSFIQ SDNEWFFFSP RGRKYPNGSQ SKRATECGYW KATGKERNVK SGSNIIGTKR  120
TLVFHLGRAP KGERTEWIMH EYCINDKSQE SLVICRLKRN TEFRLSDASN RASSSQRHPV  180
NSHESGCAIS GGGIDQRDAC EQDKEVGCSS KRDSSSYGSP SMEQIDSVSE SNQRPVNEAT  240
FTESSGQPKE GYEEDCYAEI LKDDIIKLDE SSVLVESHTR PQDPTQMQPA PQGTAQRRIR  300
LRVGNSKHSR AVVRFPSTMH SSKNTFFART TNSLVVLAFF VFTLMVLYFL SLVRGQKQDK  360
YCGEFSGVNH D*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A6e-451715719165NAC domain-containing protein 19
3swm_B6e-451715719165NAC domain-containing protein 19
3swm_C6e-451715719165NAC domain-containing protein 19
3swm_D6e-451715719165NAC domain-containing protein 19
3swp_A6e-451715719165NAC domain-containing protein 19
3swp_B6e-451715719165NAC domain-containing protein 19
3swp_C6e-451715719165NAC domain-containing protein 19
3swp_D6e-451715719165NAC domain-containing protein 19
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00280DAPTransfer from AT2G27300Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.13G314600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150401e-100AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025980592.10.0uncharacterized protein LOC100527616 isoform X1
TrEMBLK7M2Z60.0K7M2Z6_SOYBN; Uncharacterized protein
STRINGGLYMA13G39090.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF73153346
Representative plantOGRP10249610
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27300.12e-99NTM1-like 8