PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.13G267500.1.p | ||||||||
Common Name | GLYMA_13G267500, LOC102663281 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | WRKY | ||||||||
Protein Properties | Length: 297aa MW: 33864.9 Da PI: 6.2576 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 70.3 | 2.8e-22 | 134 | 194 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 +Dgy WrKYGqK+ ++++ rsYYrC+++ gC++ k+v+r +++p + +tY g+H+++ Glyma.13G267500.1.p 134 EDGYVWRKYGQKMTLNAKYLRSYYRCSHKndqGCQAMKQVQRIQDNPPLYRTTYYGHHTCR 194 8***************************99999**************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50811 | 20.736 | 128 | 196 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 1.2E-24 | 128 | 196 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.57E-23 | 130 | 196 | IPR003657 | WRKY domain |
SMART | SM00774 | 4.5E-34 | 133 | 195 | IPR003657 | WRKY domain |
Pfam | PF03106 | 7.5E-23 | 134 | 194 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 297 aa Download sequence Send to blast |
MENQNQLPNG KNAMEEELIR GRDMANQILE VLAHDKDEGS TNSKSVLPFV EDLVRKVLCS 60 FTNTLLLLNS NNDVSYEVVA SIAPKHVSSS TSSPKLESSD ETCKSLMNTK TRRRGYKRKS 120 IAPAWEKDSS ILIEDGYVWR KYGQKMTLNA KYLRSYYRCS HKNDQGCQAM KQVQRIQDNP 180 PLYRTTYYGH HTCRSPLNPE IILEPISPSA SSTLLSFNNS FQRQQESPFP SSLLASTKQE 240 PVEVIQDYHS AQNQLSSPED LLLYDYDFFF DYSKRVASLS STETVEFENV YEQFGF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6ir8_A | 2e-19 | 133 | 194 | 8 | 69 | OsWRKY45 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 112 | 118 | RRGYKRK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.13G267500.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006595435.1 | 0.0 | probable WRKY transcription factor 70 | ||||
Refseq | XP_028188964.1 | 0.0 | WRKY DNA-binding transcription factor 70-like | ||||
TrEMBL | A0A445IB20 | 0.0 | A0A445IB20_GLYSO; Putative WRKY transcription factor 70 | ||||
TrEMBL | K7M256 | 0.0 | K7M256_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA13G34251.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF12638 | 11 | 34 | Representative plant | OGRP14 | 17 | 875 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G22570.1 | 2e-27 | WRKY DNA-binding protein 38 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.13G267500.1.p |
Entrez Gene | 102663281 |