PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.13G267400.1.p | ||||||||
Common Name | GLYMA_13G267400, LOC102663141 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | WRKY | ||||||||
Protein Properties | Length: 295aa MW: 33765.9 Da PI: 6.5825 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 73.6 | 2.6e-23 | 132 | 193 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 ++Dgy+WrKYGqK+ ++++ r+YYrCt++ gC ++k+v+r +edp + ++tY g+Hn++ Glyma.13G267400.1.p 132 MEDGYAWRKYGQKMTMNAKYLRNYYRCTHKydqGCLATKQVQRIQEDPPLYHTTYYGHHNCK 193 58***************************99999**************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 6.8E-25 | 120 | 193 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 21.333 | 127 | 195 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.28E-23 | 129 | 193 | IPR003657 | WRKY domain |
SMART | SM00774 | 7.7E-36 | 132 | 194 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.8E-22 | 133 | 193 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 295 aa Download sequence Send to blast |
MENQPSNGRK AIEEELIKGR DIANQLLEIL APKSNTTQHK GVEVEALVLP FAEDLVRKVL 60 RSLTNTLLLL NTHSDHVSDE VVLPVTIKGV SSSVKCQKPE YKDESFNAKR RSGSYKRKSS 120 APTWEKNSSI LMEDGYAWRK YGQKMTMNAK YLRNYYRCTH KYDQGCLATK QVQRIQEDPP 180 LYHTTYYGHH NCKSSLMLEP ASSSDSSMFL SFSNTFPNKA EYPFSSSLYS SMKQEPMEVI 240 HEDHIVHNQL PSSDYHMLCD YDLDFNYSRY GTMLSSTESV QFDEVCRSDQ EFDG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6ir8_A | 3e-19 | 132 | 193 | 8 | 69 | OsWRKY45 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.13G267400.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC254324 | 1e-82 | AC254324.1 Phaseolus vulgaris cultivar G19833 clone PV_GBb015-K06, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006595434.1 | 0.0 | probable WRKY transcription factor 70 isoform X1 | ||||
TrEMBL | K7M255 | 0.0 | K7M255_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA13G34240.2 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF12638 | 11 | 34 | Representative plant | OGRP14 | 17 | 875 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G56400.1 | 4e-24 | WRKY DNA-binding protein 70 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.13G267400.1.p |
Entrez Gene | 102663141 |