PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.13G062000.1.p
Common NameGLYMA_13G062000, LOC100781383
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family NAC
Protein Properties Length: 359aa    MW: 40711.5 Da    PI: 6.4384
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.13G062000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM178.22.2e-55201461129
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                          lppGfrFhPtdeel+++yL +kv ++ + + ++i e+d++k+ePwdLp ++k +ekewyfF+ rd+ky+tg+r+nrat  gyWkatgkd+
  Glyma.13G062000.1.p  20 LPPGFRFHPTDEELITHYLSQKVLDSCFCA-RAIGEADLNKCEPWDLPWMAKMGEKEWYFFCVRDRKYPTGQRTNRATGVGYWKATGKDR 108
                          79************************9888.89***************8888899*********************************** PP

                  NAM  91 evlskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                          e+++  ++l+g+kktLvfykgrap+gekt+Wvmheyrle
  Glyma.13G062000.1.p 109 EIYK-AKALIGMKKTLVFYKGRAPSGEKTSWVMHEYRLE 146
                          ****.999*****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.7E-6216170IPR003441NAC domain
PROSITE profilePS5100558.2720170IPR003441NAC domain
PfamPF023651.6E-2921145IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MQAMENIHQR EILEEQRFEL PPGFRFHPTD EELITHYLSQ KVLDSCFCAR AIGEADLNKC  60
EPWDLPWMAK MGEKEWYFFC VRDRKYPTGQ RTNRATGVGY WKATGKDREI YKAKALIGMK  120
KTLVFYKGRA PSGEKTSWVM HEYRLEDEHS VHNPPKKAMN DWAICRIFQK SNGGKKMPIS  180
GLVRFSNFAK DMPSLMDSSP YNDSESKPVL GESSQPTCFS DPNQSEDQRT QDENIADSYE  240
TLMLASSYSS NPSDISPASW TFSKSAPTVS HQSLQVGNSH SSDYFMLHQE QSMLGMLIEN  300
HGASAGQRTQ KAQDSKGSDA DMSSVMYNNY EMFQRSFGNQ EYSSPSVGHV YSSGLWGF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-531717614171NO APICAL MERISTEM PROTEIN
1ut4_B2e-531717614171NO APICAL MERISTEM PROTEIN
1ut7_A2e-531717614171NO APICAL MERISTEM PROTEIN
1ut7_B2e-531717614171NO APICAL MERISTEM PROTEIN
4dul_A2e-531717614171NAC domain-containing protein 19
4dul_B2e-531717614171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.13G062000.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by the microRNA miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150442e-90AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003543855.10.0NAC domain-containing protein 100
SwissprotQ9FLJ21e-117NC100_ARATH; NAC domain-containing protein 100
TrEMBLI1LWL60.0I1LWL6_SOYBN; Uncharacterized protein
STRINGGLYMA13G05540.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40934171
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61430.11e-119NAC domain containing protein 100
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]