PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.13G006100.1.p | ||||||||
Common Name | GLYMA_13G005900, GLYMA_13G006100 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | MYB_related | ||||||||
Protein Properties | Length: 175aa MW: 19869.6 Da PI: 8.2729 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 44.3 | 4e-14 | 109 | 154 | 2 | 47 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +rWT eE+ l++++ + +G+g+Wk I+++ k+Rt q+ + qky Glyma.13G006100.1.p 109 KRWTNEEHRLFLEGLAYFGKGDWKNISKHAVKTRTKTQVATHAQKY 154 69*******************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 12.767 | 104 | 159 | IPR017930 | Myb domain |
SMART | SM00717 | 7.7E-7 | 107 | 157 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.7E-10 | 109 | 155 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 3.4E-11 | 109 | 154 | IPR001005 | SANT/Myb domain |
TIGRFAMs | TIGR01557 | 2.2E-14 | 110 | 157 | IPR006447 | Myb domain, plants |
SuperFamily | SSF46689 | 4.41E-17 | 110 | 160 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.42E-8 | 110 | 155 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 175 aa Download sequence Send to blast |
MLGFDDGDSD SDNEQALFGK YPELQMFKWE NSLIHLPSNL SSLLLPQTPL FHCEREETLR 60 VHPPPFLPLQ ETLDHLSANT APTQDITHLQ QARPANPPPT SSPSPNLCKR WTNEEHRLFL 120 EGLAYFGKGD WKNISKHAVK TRTKTQVATH AQKYFLHIKE KGKGKRKSLF DMAL* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.13G006100.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028198046.1 | 1e-107 | uncharacterized protein LOC114382676 | ||||
TrEMBL | K7LYC0 | 1e-126 | K7LYC0_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA13G11174.1 | 1e-127 | (Glycine max) | ||||
STRING | GLYMA13G11187.1 | 1e-127 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF20197 | 2 | 5 | Representative plant | OGRP12301 | 3 | 6 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G09450.1 | 4e-22 | MYB_related family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.13G006100.1.p |