PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.12G196900.1.p

Common Name

GLYMA_12G196900, LOC102666676

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

bHLH

Protein Properties

Length: 239aa MW: 26975.8 Da PI: 9.1532

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.12G196900.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	24.1	6.4e-08	105	145	10	55
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r+RR+++ ++ L++l+P++ kK++ a+ Le+A +Y+k Lq Glyma.12G196900.1.p 105 RQRRQKLSEKTRYLQKLMPWD-----KKMDQATLLEEAYKYVKFLQ 145 9*****************9.....9****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	12.455	95	144	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	3.8E-6	101	150	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.26E-6	101	147	No hit	No description
Gene3D	G3DSA:4.10.280.10	1.5E-9	103	153	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.3E-5	105	145	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.01E-10	105	162	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 239 aa Download sequence Send to blast
MFSGDGSSMD PMFSGMSLQS LLSMNPSLFE DGFPTLSSLT DDVPTLIIPQ STELNHTNAN 60 TKLPIPKTEP LNFFPQYQLP PLCSPEPKRQ RLESPPVIPQ SSLARQRRQK LSEKTRYLQK 120 LMPWDKKMDQ ATLLEEAYKY VKFLQAQSRV LHSMPSHSHS HSQFCQNGAA FGDLEKLNRS 180 QALQVLVNSP VAQTMLYSQG FCVFSLEQLS LLRKLSQTRQ QQQHMPPDPA SSSRTFFN*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.12G196900.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006593282.1	1e-174	transcription factor bHLH117
Refseq	XP_028193387.1	1e-174	transcription factor bHLH117
TrEMBL	A0A0B2R1J6	1e-173	A0A0B2R1J6_GLYSO; Transcription factor bHLH117
TrEMBL	K7LVY8	1e-173	K7LVY8_SOYBN; Uncharacterized protein
STRING	GLYMA12G32305.1	1e-173	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF13426	21	24
Representative plant	OGRP11266	5	6

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22100.1	1e-22	bHLH family protein

Link Out ? help Back to Top
Phytozome	Glyma.12G196900.1.p
Entrez Gene	102666676