PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.12G024400.1.p
Common NameGLYMA_12G024400
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 276aa    MW: 30743.4 Da    PI: 8.1199
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.12G024400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.51.2e-08756154
                         CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                  HLH  1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                         r++ +  rE+ RRdr N  f eL  +l ++     +K++Ka+iL  +++ +k+L
  Glyma.12G024400.1.p  7 RKTQKADREKLRRDRFNVQFVELGNILDPD----RPKNDKATILGDTIQLLKDL 56
                         6788999********************997....79**************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.102.1E-11678IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088812.144656IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.49E-12674IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.02E-5761No hitNo description
PfamPF000102.4E-6756IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-51262IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MDCTAARKTQ KADREKLRRD RFNVQFVELG NILDPDRPKN DKATILGDTI QLLKDLTSEV  60
SKLKDEYATL NEESCELAQE KNELREEKAS LKSDILKLNN QYQQQLRTVS PWTATDRSIM  120
LAPPSYPYPV PMPIPPAPIA MQPYPFYANQ HSAIIPNPCS TFVPYLVPNT LTEQRSTQYM  180
SPPVHPGFRS HVSGKQESRN KSSKESKAEK HEDSNDVTLT PGSSADQDLS SGQRKSSKLS  240
RKESSCTEVS SLDRCSLSCS VQDSSSSSVV HKHKG*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.532620.0root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.12G024400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0935590.0BT093559.1 Soybean clone JCVI-FLGm-14O3 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001242300.20.0transcription factor bHLH121-like
SwissprotQ9LT232e-75BH121_ARATH; Transcription factor bHLH121
TrEMBLI1LPG70.0I1LPG7_SOYBN; Uncharacterized protein
STRINGGLYMA12G02740.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22823376
Representative plantOGRP34011425
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19860.14e-64bHLH family protein
Publications ? help Back to Top
  1. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  2. Min JH, et al.
    Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element.
    Front Plant Sci, 2017. 8: p. 2100
    [PMID:29321786]