PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.11G221500.1.p | ||||||||
Common Name | GLYMA_11G221500, LOC100788082 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | C2H2 | ||||||||
Protein Properties | Length: 265aa MW: 29768.4 Da PI: 8.4191 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.5 | 0.0001 | 56 | 78 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C++ F++ L H+++H Glyma.11G221500.1.p 56 YSCNFCKREFRSAQALGGHMNVH 78 99*******************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 2.02E-6 | 53 | 83 | No hit | No description |
PROSITE profile | PS50157 | 11.219 | 56 | 83 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0072 | 56 | 78 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 7.3E-6 | 56 | 79 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 58 | 78 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 265 aa Download sequence Send to blast |
MEESQYLLWI RRKQMLKSHI QQPFGTNNNS SSWEERAFAE DAARILGGCI WPPRSYSCNF 60 CKREFRSAQA LGGHMNVHRR DRARLKQSLS HHHNELALQH HHKNDCTVAT SKVSSSRPST 120 ISIQENCYHH QPTMSSYSSS IGWGHHHHNM GSSDSEPKEQ VTAREEFLKG LGCNDFFETS 180 LSVGQSAVVF GQKLPTTTDH SCGDEGISYK RSKTSMAPLP AVFLKPCSND RNLTFQSAEF 240 VLGVKPGMED LDLELRLGKP QKVI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1njq_A | 1e-12 | 51 | 78 | 2 | 29 | superman protein |
2l1o_A | 1e-12 | 51 | 78 | 2 | 29 | Transcriptional regulator SUPERMAN |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.11G221500.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003537464.1 | 0.0 | probable transcriptional regulator RABBIT EARS | ||||
TrEMBL | K7LRK9 | 0.0 | K7LRK9_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA11G34285.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1776 | 30 | 78 | Representative plant | OGRP576 | 15 | 81 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37740.1 | 2e-27 | zinc-finger protein 10 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.11G221500.1.p |
Entrez Gene | 100788082 |