PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.11G199300.1.p
Common NameGLYMA_11G199300
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ERF
Protein Properties Length: 273aa    MW: 30148.6 Da    PI: 8.2497
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.11G199300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP268.11.7e-21122171255
                  AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          +++GVr+++ +grW AeIrdp++   rkr++lg+f+taeeAa+ +++a+ kl+g
  Glyma.11G199300.1.p 122 KFRGVRQRP-WGRWTAEIRDPTQ---RKRVWLGTFDTAEEAAAVYDEAAVKLKG 171
                          89*******.**********965...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381239.1E-6515272IPR017392AP2/ERF transcription factor ERF/PTI6
SMARTSM003801.7E-38122185IPR001471AP2/ERF domain
PfamPF008471.5E-13122171IPR001471AP2/ERF domain
PROSITE profilePS5103223.907122179IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.2E-31122181IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-23122181IPR016177DNA-binding domain
CDDcd000181.32E-33122181No hitNo description
PRINTSPR003671.4E-10123134IPR001471AP2/ERF domain
PRINTSPR003671.4E-10145161IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MSVQPPMKLH NHPFNPQASS SNFDGDPPCK TAGKTKPPHT KLLRVILTDH DATDSDSSGD  60
DEDPKNTKKH KKVKRQITHI TINLPFFSKS PTPTSTPSSS SLDPTRSTRP KKRLGVPRRR  120
NKFRGVRQRP WGRWTAEIRD PTQRKRVWLG TFDTAEEAAA VYDEAAVKLK GPNAVTNFPL  180
SAAGNTEHDT PPPETVFSGE GLSSPTSVLT YCDGDSTPFD GFRYGEVDAF GFEFDIDAPF  240
SLTAVNLGVL SQRFGKEEFG EFDPNEFLTW PS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A7e-20115179772Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1110119KKRLGVPRRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.11G199300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2357420.0AC235742.1 Glycine max strain Williams 82 clone GM_WBb0107P15, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003537365.20.0pathogenesis-related genes transcriptional activator PTI6
TrEMBLK7LR630.0K7LR63_SOYBN; Uncharacterized protein
STRINGGLYMA11G31401.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF55853252
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.11e-25cytokinin response factor 4