PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.11G043200.1.p
Common NameGLYMA_11G043200, LOC100790748
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C2H2
Protein Properties Length: 261aa    MW: 28642.8 Da    PI: 7.6439
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.11G043200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.20.0001389111123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          y+C+ C + F++   L  H+++H
  Glyma.11G043200.1.p  89 YTCTFCRREFRSAQALGGHMNVH 111
                          9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.99E-686116No hitNo description
PROSITE profilePS5015711.15789116IPR007087Zinc finger, C2H2
PfamPF139122.0E-589112IPR007087Zinc finger, C2H2
SMARTSM003550.006689111IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028091111IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MAAEIGLVSM TQIQNLSQPQ HPKTQQQQQP QPKNPNSTTT TSSSTWMWNP RKQQHQQQQV  60
EDDDDSWEVR AFAEDTRNIM GTTWPPRSYT CTFCRREFRS AQALGGHMNV HRRDRARLHQ  120
APVPSSSSNP MTSSLPTSPF INIPPQDLVA NAGLCLLYHL PKSPSSTAPP FPPSPTTPSP  180
STLLSISSYP TTNFLMQTSF NFPGAPATGI NTTTTTTVSS LCYNSSKVEQ SATSSSIDHN  240
GHLEELDLEL RLGHKPTPTS *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A2e-1384111229superman protein
2l1o_A2e-1384111229Transcriptional regulator SUPERMAN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.11G043200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHM0384850.0HM038485.1 Glycine max PALMATE-LIKE PENTAFOLIATA1 (PALM1) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014619310.10.0transcriptional regulator SUPERMAN
RefseqXP_028189361.10.0transcriptional regulator SUPERMAN-like
TrEMBLK7LN070.0K7LN07_SOYBN; Uncharacterized protein
STRINGGLYMA11G04640.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35253155
Representative plantOGRP5761581
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17810.11e-31C2H2 family protein