PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.10G241400.1.p

Common Name

GLYMA_10G241400, Glyma10g38630.1, LOC100804315

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

bHLH

Protein Properties

Length: 249aa MW: 28352.2 Da PI: 9.5868

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.10G241400.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	36.6	7.9e-12	76	128	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++ h e+Er+RR+++ + + Lr+llP ++ ++K s ++ +Av+YI++Lq Glyma.10G241400.1.p 76 KKMVHREIERQRRQEMATLHASLRSLLPLRF--IKGKRSISDQMNEAVNYINHLQ 128 6889***********************65..*******************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	12.874	75	127	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.62E-12	75	146	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	5.8E-10	76	144	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	6.6E-9	76	128	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.34E-7	76	132	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006357	Biological Process	regulation of transcription from RNA polymerase II promoter
GO:0090575	Cellular Component	RNA polymerase II transcription factor complex
GO:0000977	Molecular Function	RNA polymerase II regulatory region sequence-specific DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 249 aa Download sequence Send to blast
MFPLQRGNEL VIHFSNGLYP QHKISQDLIR DDQNIDQSPH VGYSDKKWRT SRPKKLFYHE 60 AAATSHANSS NQEYAKKMVH REIERQRRQE MATLHASLRS LLPLRFIKGK RSISDQMNEA 120 VNYINHLQKN IKELSDKRDK LKKKPSINST PEGHENCKHV SSGFTIHQNS GGAVGIEISG 180 FSEEEVPLSK LLKLVLEERL EVVSCLSTKV NGRLLHSLQC EVDNSDSVDL SELRRKFSNV 240 IPSLRCSE*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.30218	0.0	root

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.10G241400.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KT031116	0.0	KT031116.1 Glycine max clone HN_CCL_215 bHLH transcription factor (Glyma10g38630.1) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003536495.1	0.0	transcription factor bHLH118
TrEMBL	I1LDX5	0.0	I1LDX5_SOYBN; BHLH transcription factor
STRING	GLYMA10G38630.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF792	33	125
Representative plant	OGRP1638	8	38

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G25400.1	4e-30	bHLH family protein

Link Out ? help Back to Top
Phytozome	Glyma.10G241400.1.p
Entrez Gene	100804315

Publications ? help Back to Top
Chai C, et al. Soybean transcription factor ORFeome associated with drought resistance: a valuable resource to accelerate research on abiotic stress resistance. BMC Genomics, 2015. 16: p. 596 [PMID:26268547]