PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Glyma.10G219600.1.p | ||||||||
Common Name | GLYMA_10G219600, SNAC38 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 561aa MW: 62759.9 Da PI: 4.4481 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 172.3 | 1.5e-53 | 20 | 146 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 +pGfrFhPtdeelv++yLk+k+ gk+l+l +vi+e+d+yk++P+dLp + +k+++++w+fF++rd+ky++g r+nrat++gyWkatgkd Glyma.10G219600.1.p 20 MPGFRFHPTDEELVMYYLKRKICGKRLKL-DVIRETDVYKWDPEDLPgQsILKTGDRQWFFFCHRDRKYPNGGRSNRATRRGYWKATGKD 108 69***************************.99**************96446788999********************************* PP NAM 90 kevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 ++v++ +++ vg+kktLvfy grap+ge+tdWvmhey+l Glyma.10G219600.1.p 109 RNVIC-NSRSVGVKKTLVFYAGRAPSGERTDWVMHEYTL 146 *****.999****************************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.45E-60 | 15 | 169 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 54.219 | 19 | 169 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.9E-28 | 21 | 146 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 561 aa Download sequence Send to blast |
MGEASGAGSA DCFSQMMSSM PGFRFHPTDE ELVMYYLKRK ICGKRLKLDV IRETDVYKWD 60 PEDLPGQSIL KTGDRQWFFF CHRDRKYPNG GRSNRATRRG YWKATGKDRN VICNSRSVGV 120 KKTLVFYAGR APSGERTDWV MHEYTLDEEE LKRCLGVKDY YALYKVYKKS GPGPKNGEQY 180 GAPFNEEQWA DDDIVDFNIN SADQEAPNDV DNGNVLQPLL DDEIDNIIRG ILDDELVLDQ 240 QHVNGYPDFP QVVSEETQST VVDQFSEAVM FPEPVRITQP SNQFFDAQPS FDFNQPVTSH 300 LHVSEASEVT SASSIKAKEL DFNEDGFLEI NDLIDTEPIL ANMENPVEYQ QFEDGLSELD 360 LFQDAQMFLR DLGPIIHETD SHAYTNAFVS SNIESQSYQL LPNPEDANQT VGEFWMHGER 420 NTPSASEGFV DSFSLSSPGV VYESVGFPTE GNNNQSSTVE DVATSSFSSA LWAFVESIPT 480 TPASAAESAL VNRALNRMSS FSRLKIKHTN IAAAGKDTAT MKRAGRKGLP FLFFPIIIAL 540 CAFCWVFVGN LRLLGRCVSP * |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 2e-49 | 21 | 146 | 17 | 140 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 37 | 46 | KRKICGKRLK |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Gma.50299 | 0.0 | cotyledon| flower| leaf| pod| root| somatic embryo| stem |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Glyma.10G219600.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | KF657305 | 0.0 | KF657305.1 Glycine max NAC transcription factor (SNAC38) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | NP_001274375.1 | 0.0 | uncharacterized protein LOC100794925 | ||||
TrEMBL | I1LDA8 | 0.0 | I1LDA8_SOYBN; NAC transcription factor | ||||
STRING | GLYMA10G36360.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6131 | 34 | 51 | Representative plant | OGRP9932 | 7 | 11 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G34190.1 | 1e-133 | NAC domain containing protein 17 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Glyma.10G219600.1.p |
Entrez Gene | 100794925 |