PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.10G191000.1.p
Common NameGLYMA_10G191000, LOC100813935
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB
Protein Properties Length: 267aa    MW: 31280.1 Da    PI: 8.6021
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.10G191000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding59.47.7e-192370148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g+WT eEd ll+++vk +G g+W+++ar  g++R +k+c++rw +yl
  Glyma.10G191000.1.p 23 KGPWTSEEDRLLIQYVKFHGEGRWNSVARLAGLKRNGKSCRLRWVNYL 70
                         79********************************************97 PP
2Myb_DNA-binding49.21.2e-1577120247
                          SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          g  T++E+ ++ ++++++G++ W+tIar ++ gRt++++k++w+++
  Glyma.10G191000.1.p  77 GHITPQEESIIQELHARWGNR-WSTIARSLP-GRTDNEIKNYWRTH 120
                          667******************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129423.3661874IPR017930Myb domain
SuperFamilySSF466894.77E-3020117IPR009057Homeodomain-like
SMARTSM007173.4E-162272IPR001005SANT/Myb domain
PfamPF002496.5E-172370IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.0E-232476IPR009057Homeodomain-like
CDDcd001673.17E-112570No hitNo description
PROSITE profilePS5129418.54675125IPR017930Myb domain
SMARTSM007171.7E-1475123IPR001005SANT/Myb domain
PfamPF002491.5E-1376120IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.3E-2477124IPR009057Homeodomain-like
CDDcd001673.32E-980121No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MYWEVMAGNM GWSVIIEEEG WRKGPWTSEE DRLLIQYVKF HGEGRWNSVA RLAGLKRNGK  60
SCRLRWVNYL RPDLKKGHIT PQEESIIQEL HARWGNRWST IARSLPGRTD NEIKNYWRTH  120
FKKKTKTPSD AAEKARIRSS RRQQFQQQQQ QLKQQQVQQQ QQQQQQFQFN LDMKGIINLL  180
EENNHRVPSI SQEAQEMASM YPNTSEQQDY FYSMFNVNDN NVSAPECLNE EILWDGLWNL  240
DDVLCNFNAA SATSKASLHN LVAPFC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C3e-272312527128MYB TRANSFORMING PROTEIN
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Mainly expressed in floral tissues. expressed in all four whorls of the flower, in the anther vascular tissue and in cells at the junction between anther and stamen filaments. Detected in the nectaries and ovules. {ECO:0000269|PubMed:16805732, ECO:0000269|PubMed:19325888, ECO:0000269|Ref.1}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in photomorphogenesis in the light. May act downstream of the light receptor network and directly affects transcription of light-induced genes. In darkness, its probable degradation prevent the activation of light-induced genes. Required to activate expression of PAL. Acts redundantly with MYB24 and MYB57 to control stamen filament elongation in the late developed flowers. Contributes with MYB24 to induction of MYB108 by jasmonate. Repressed at the transcript levels by DELLA proteins. {ECO:0000269|PubMed:11967090, ECO:0000269|PubMed:16805732, ECO:0000269|PubMed:19091873, ECO:0000269|PubMed:19325888, ECO:0000269|PubMed:21447791}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.10G191000.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by jasmonate. {ECO:0000269|PubMed:16805732}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0970470.0BT097047.1 Soybean clone JCVI-FLGm-15J22 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003536262.10.0myb-related protein 305
RefseqXP_028184030.10.0myb-related protein 305-like
SwissprotQ9LK959e-53MYB21_ARATH; Transcription factor MYB21
TrEMBLA0A445IPN10.0A0A445IPN1_GLYSO; Transcription factor MYB2
TrEMBLI1LCF70.0I1LCF7_SOYBN; Uncharacterized protein
STRINGGLYMA10G33450.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF118234108
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24310.14e-80myb domain protein 305
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Su Z, et al.
    Flower development under drought stress: morphological and transcriptomic analyses reveal acute responses and long-term acclimation in Arabidopsis.
    Plant Cell, 2013. 25(10): p. 3785-807
    [PMID:24179129]
  3. Liu Z, et al.
    A Conserved Cytochrome P450 Evolved in Seed Plants Regulates Flower Maturation.
    Mol Plant, 2015. 8(12): p. 1751-65
    [PMID:26388305]
  4. Chen X,Huang H,Qi T,Liu B,Song S
    New perspective of the bHLH-MYB complex in jasmonate-regulated plant fertility in arabidopsis.
    Plant Signal Behav, 2016. 11(2): p. e1135280
    [PMID:26829586]
  5. Huang H, et al.
    Arabidopsis MYB24 Regulates Jasmonate-Mediated Stamen Development.
    Front Plant Sci, 2017. 8: p. 1525
    [PMID:28928760]