PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.09G169300.1.p | ||||||||
Common Name | GLYMA_09G169300, LOC100811746 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | MYB | ||||||||
Protein Properties | Length: 238aa MW: 27710.8 Da PI: 7.597 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 55.9 | 9.8e-18 | 4 | 49 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg W + Ede+l ++v+++G+++W++Ia+++ gR++k+c++rw++ Glyma.09G169300.1.p 4 RGHWRPAEDEKLRELVERYGPHNWNAIAEKLR-GRSGKSCRLRWFNQ 49 899*****************************.***********996 PP | |||||||
2 | Myb_DNA-binding | 57.8 | 2.4e-18 | 56 | 100 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r ++T+eE+e+l+ ++ +G++ W+ Iar+++ gRt++ +k++w+ Glyma.09G169300.1.p 56 RSPFTEEEEERLLASHRIHGNR-WAVIARHFP-GRTDNAVKNHWHVM 100 789*******************.*********.***********975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 19.168 | 1 | 50 | IPR017930 | Myb domain |
SMART | SM00717 | 2.9E-15 | 3 | 52 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.3E-17 | 4 | 49 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 8.99E-30 | 4 | 97 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 3.7E-27 | 5 | 57 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.27E-14 | 7 | 48 | No hit | No description |
PROSITE profile | PS51294 | 25.253 | 51 | 105 | IPR017930 | Myb domain |
SMART | SM00717 | 1.7E-16 | 55 | 103 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.3E-15 | 56 | 99 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 7.24E-13 | 58 | 101 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.2E-21 | 58 | 103 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 238 aa Download sequence Send to blast |
MCSRGHWRPA EDEKLRELVE RYGPHNWNAI AEKLRGRSGK SCRLRWFNQL DPRINRSPFT 60 EEEEERLLAS HRIHGNRWAV IARHFPGRTD NAVKNHWHVM MARIRRERSK NYSPKQPLFP 120 PNLQVDLETN FETIPSFVDK YYEKYSHPCV PLTHSSFQFP TKNFYFQDPS SAGSTVPRDN 180 CESVEFYDFL QVNTDSNKSE VTDNARRDEE EVSQDAVGMK NKDNGVPFID FLSTGGC* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 3e-32 | 4 | 103 | 7 | 106 | B-MYB |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.52526 | 0.0 | flower |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in stamen (PubMed:19325888). Present in roots and siliques, and, at low levels, in leaves and flowers (PubMed:21399993). Expressed in stems, especially in fibers and, at lower levels, in xylems (PubMed:18952777, PubMed:21399993). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:19325888, ECO:0000269|PubMed:21399993}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that confers sensitivity to abscisic acid (ABA) and salt, but tolerance to drought (PubMed:21399993). Regulates secondary cell wall (SCW) biosynthesis, especially in interfascicular and xylary fibers (PubMed:18952777, PubMed:23781226). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:21399993, ECO:0000269|PubMed:23781226}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.09G169300.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By abscisic acid (PubMed:16463103, PubMed:21399993). Accumulates in response to salt (PubMed:21399993). Triggered by MYB46 and MYB83 in the regulation of secondary cell wall biosynthesis (PubMed:19674407, PubMed:22197883). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:19674407, ECO:0000269|PubMed:21399993, ECO:0000269|PubMed:22197883}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT092893 | 0.0 | BT092893.1 Soybean clone JCVI-FLGm-12J9 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003533306.1 | 1e-180 | transcription factor MYB52 | ||||
Swissprot | Q6R0C4 | 3e-83 | MYB52_ARATH; Transcription factor MYB52 | ||||
TrEMBL | I1L3Z6 | 1e-178 | I1L3Z6_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA09G29940.1 | 1e-179 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF230 | 34 | 243 | Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G17950.1 | 1e-85 | myb domain protein 52 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.09G169300.1.p |
Entrez Gene | 100811746 |
Publications ? help Back to Top | |||
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