PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.09G143200.1.p
Common NameGLYMA_09G143200
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family HSF
Protein Properties Length: 339aa    MW: 36953.3 Da    PI: 6.0672
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.09G143200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind114.56.9e-36341252102
                          HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXX CS
         HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkk 91 
                          Fl+k++++++d++++++isw+++g++f+v++++ fa+++LpkyFkh+nf+SFvRQLn+YgF+kv  ++         weF++++F++g+k
  Glyma.09G143200.1.p  34 FLTKTFQLVDDQSIDDVISWNDDGSTFIVWNPTVFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDR---------WEFSNEYFRRGEK 114
                          9*****************************************************************99.........************* PP

                          XXXXXXXXXXX CS
         HSF_DNA-bind  92 ellekikrkks 102
                          +ll++i+r+k 
  Glyma.09G143200.1.p 115 RLLCEIQRRKI 125
                          ********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.109.7E-3823118IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.4E-5530123IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.72E-3431123IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000566.8E-203457IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004473.2E-3234123IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.8E-207284IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043407397IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.8E-208597IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MAKLPVEYNG DCATTASASA SAAAESQRSI PTPFLTKTFQ LVDDQSIDDV ISWNDDGSTF  60
IVWNPTVFAR DLLPKYFKHN NFSSFVRQLN TYGFRKVVPD RWEFSNEYFR RGEKRLLCEI  120
QRRKISSPAS SPTAPATVSV TAPMPLTAIP IISPSNSGEE QVTSSNSSPA ELLDENERLR  180
KENVQLTKEL AEMRSLCNNI YSLMSNYANA NGKGNSNGSY KTKGGAGVAH GSLESGMTAV  240
KLLDLMPVMR SSDEDAAEMA PEEMNPKLFG VAIGAKRARE GGGGGDCGGG GEEDTLLRLH  300
HAGSADVKSE PLDFQNHREN QKTPWLSPCY RTNQRVCN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hdg_A2e-233412310110Heat shock factor protein 1
5hdn_A2e-233412310110Heat shock factor protein 1
5hdn_B2e-233412310110Heat shock factor protein 1
5hdn_C2e-233412310110Heat shock factor protein 1
5hdn_D2e-233412310110Heat shock factor protein 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.166030.0leaf| seed coat
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00575DAPTransfer from AT5G62020Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.09G143200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN8963070.0JN896307.1 Glycine max heat shock transcription factor HSFB2a mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028181242.10.0heat stress transcription factor B-2a-like
SwissprotQ9SCW44e-94HFB2A_ARATH; Heat stress transcription factor B-2a
TrEMBLA0A445J1180.0A0A445J118_GLYSO; Heat stress transcription factor B-2a
TrEMBLI1L3A90.0I1L3A9_SOYBN; Uncharacterized protein
STRINGGLYMA09G26510.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20373482
Representative plantOGRP9617233
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62020.16e-87heat shock transcription factor B2A
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]