PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.09G121900.1.p
Common NameGLYMA_09G121900
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family FAR1
Protein Properties Length: 537aa    MW: 61247.8 Da    PI: 7.5095
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.09G121900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR130.11.6e-09501201175
                 FAR1  11 GFsvrkskskks......krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgk 75 
                          GFs+r ++  k       k+   ++kr+fvC + g+++++k  + +++r++++ +++C ak+ + k+k ++
  Glyma.09G121900.1.p  50 GFSIRSDHVFKCskseneKNPSGVYKREFVCHRAGNAKHHKVIELERKRKQKSLKCNCSAKMWIAKRKIEV 120
                          666666554433333333556679****************999999999****************997433 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031017.6E-749117IPR004330FAR1 DNA binding domain
PfamPF105513.2E-8260302IPR018289MULE transposase domain
Sequence ? help Back to Top
Protein Sequence    Length: 537 aa     Download sequence    Send to blast
MKEGGLGGVG VEQGGEEVRV EREEKCMEAS RARGAKKENG ILSVKVKSGG FSIRSDHVFK  60
CSKSENEKNP SGVYKREFVC HRAGNAKHHK VIELERKRKQ KSLKCNCSAK MWIAKRKIEV  120
QYLPAYHDIP ADDHNRILLL SKVCCLVSLI IKVLELEKGI DADNLSFLEK DIKNFIQSQH  180
SIEEENEGTE VLKLCKSLKD KDDAFQYDFT LDENNKLEHI IWVFGDSIRA YEAFGDAVIF  240
DTTYGINRYD MPHGLWIGSF MSFVKGKCLQ TILTDEDLAL EEAISTEFPN TKHAFCIWHI  300
VAKLSTWFSF PLGSRYNEFK YEFHRLYNLE CAVDFENNGK NQAGEEARMR KKYHNPSIRT  360
SFPIEEHVAT ILTPYAFELL QHEIELSTKY AATKTKVKCL KTKDRVEVVV KELKRIIELV  420
KGMPEVQEDS IELEHFAPND NECDVKNFMI SKTKGCPRGS RPKGGVEVAK NSGRCHIPNY  480
DGTNHDSQNC PNKKKNVENL SSQSSTKIAK GWKSSLKEDV HQSMDELKEY FSLFCD*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.09G121900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020219746.11e-174protein FAR1-RELATED SEQUENCE 11
TrEMBLK7LDF60.0K7LDF6_SOYBN; Uncharacterized protein
STRINGGLYMA09G21805.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF59430113
Representative plantOGRP3012351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10240.15e-62FAR1-related sequence 11