PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.09G012900.1.p
Common NameGLYMA_09G012900, LOC100817107
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family FAR1
Protein Properties Length: 692aa    MW: 79694.5 Da    PI: 6.1022
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.09G012900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR167.92.5e-2168159190
                 FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnH 87 
                          ++Y ++A++ GFs+rk++s+ s + g i+kr+fvC+++g++  +kk + +++r r++ r+gC+ak+ ++ke     ++w v ++++ HnH
  Glyma.09G012900.1.p  68 EYYGNFARKNGFSIRKERSRISPQLG-IYKRDFVCYRSGFAPVKKKPNGEHHRDRKSVRCGCDAKMYLSKEVvegVSQWFVVQFSNVHNH 156
                          59********************8888.********************9**********************99877789************ PP

                 FAR1  88 ela 90 
                          el 
  Glyma.09G012900.1.p 157 ELL 159
                          *96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.7E-1968159IPR004330FAR1 DNA binding domain
PfamPF105511.0E-17291382IPR018289MULE transposase domain
PROSITE profilePS5096610.101563598IPR007527Zinc finger, SWIM-type
PfamPF044344.1E-7571594IPR007527Zinc finger, SWIM-type
SMARTSM005759.7E-5573600IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 692 aa     Download sequence    Send to blast
MASMPSKNIC IRRQQCPCGD WKCYITYEGD AEEGSAAPEL VKAEKASSGA MVTPYVGMVF  60
KSDDDAFEYY GNFARKNGFS IRKERSRISP QLGIYKRDFV CYRSGFAPVK KKPNGEHHRD  120
RKSVRCGCDA KMYLSKEVVE GVSQWFVVQF SNVHNHELLE DDQVRLLPAY RKIHEADQER  180
ILLLSKAGFP IHRIVKMLEL EKGIQGGQLP FLERDVRNFV QNRKKVVQEN EALLSEKREN  240
DVLELLEACK AMKEADDDFV YDFTVDANDK VENVAWSYSD SVNANAMFGD VVYFDSSHRS  300
VTYGLLFGVW FGIDSYGRTI FFGCVLLQDE TPQSFSWALQ TFVRFMRGRC PQTILTDLDP  360
GLRDAIRSEF PGTKHVIPHW NILYKVPCWF SPPLGSRYTE FKSEFDALFH IENTEEFEHQ  420
WRQMISLFEL GSDKHTDLLY SVRASWAQAY VRGYFLAQMA TIAYSKSIDA FLKGIFTAHT  480
CLRSFFEQVG ISASFQHQAH QETQYIHLKT CIPIEEHARS ILTPFAFNAL QQELLLAMQY  540
AASEMANGSY IVRHFKSMDG EWLVIWLAED DQIHCSCKEF ESSGILCRHA LRVLVIKNYF  600
QLPDKYFLGR WRRECSLLVD DDQNNLGIGE EWFQEYQSLA ETLFQESSIT KERSDYVRKE  660
LTKELTRLLN EVRNLPEADG VCMNTSVSPA N*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.376990.0cotyledon| seed coat
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.09G012900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150380.0AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003534740.10.0putative protein FAR1-RELATED SEQUENCE 10
RefseqXP_006586777.10.0putative protein FAR1-RELATED SEQUENCE 10
RefseqXP_028181155.10.0putative protein FAR1-RELATED SEQUENCE 10
RefseqXP_028181156.10.0putative protein FAR1-RELATED SEQUENCE 10
SwissprotQ9LKR40.0FRS10_ARATH; Putative protein FAR1-RELATED SEQUENCE 10
TrEMBLA0A445IVL30.0A0A445IVL3_GLYSO; Uncharacterized protein
TrEMBLI1L0230.0I1L023_SOYBN; Uncharacterized protein
STRINGGLYMA09G01540.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF59430113
Representative plantOGRP3012351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28530.10.0FAR1-related sequence 10
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]