PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.08G302500.1.p
Common NameGLYMA_08G302500
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bZIP
Protein Properties Length: 325aa    MW: 35345.6 Da    PI: 5.1812
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.08G302500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_149.11.3e-15244305162
                          XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
               bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62 
                          +ke+kr +r+ +NR++A+  R+RKka++  Le++vk Le++N++Lk++l++l++e + l++ 
  Glyma.08G302500.1.p 244 DKESKRLKRLLRNRVSAQQARERKKAYLIDLETRVKDLEKKNSELKERLSTLQNENQMLRQI 305
                          689******************************************************99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF578501.73E-3123109No hitNo description
Gene3DG3DSA:3.30.40.104.1E-3024113IPR013083Zinc finger, RING/FYVE/PHD-type
PfamPF145696.5E-3529105IPR027934Cellulose synthase, RING-type zinc finger
PROSITE profilePS500899.1263985IPR001841Zinc finger, RING-type
SMARTSM003385.0E-17244308IPR004827Basic-leucine zipper domain
PfamPF001705.7E-14245306IPR004827Basic-leucine zipper domain
PROSITE profilePS5021712.702246309IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1701.6E-16248308No hitNo description
SuperFamilySSF579595.31E-13248306No hitNo description
CDDcd147041.25E-20249300No hitNo description
PROSITE patternPS000360251266IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MERSGGMVTG SHERNELVRV RHGSDSRSKP LKNLNGQSCQ ICGDTIGLTA TGDVFVACHE  60
CGFPLCHSCY EYELKHMSQS CPQCKTAFTS HQEGAEVEGD DDDEDDADDL DNEINYGQGN  120
SSKAGMLWEE DADLSSSSGH DSQIPNPHLA NGQPMSGEFP CATSDAQSMQ TTSIGQSEKV  180
HSLSYADPKQ PGPESDEEIR RVPEIGGESA GTSASQPDAG SNAGTERVQG TGEGQKKRGR  240
SPADKESKRL KRLLRNRVSA QQARERKKAY LIDLETRVKD LEKKNSELKE RLSTLQNENQ  300
MLRQILKNTT ASRRGSNNGT NNAE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1weo_A1e-242688668cellulose synthase, catalytic subunit (IRX3)
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.85370.0cotyledon| flower| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.08G302500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0935480.0BT093548.1 Soybean clone JCVI-FLGm-17O14 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001238218.20.0transcription factor STF2
TrEMBLI1KXV20.0I1KXV2_SOYBN; Uncharacterized protein
STRINGGLYMA08G41450.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF70643248
Representative plantOGRP20811737
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11260.14e-57bZIP family protein