PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.08G134700.1.p
Common NameGLYMA_08G134700, LOC100781980
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C2H2
Protein Properties Length: 319aa    MW: 35449.1 Da    PI: 7.3873
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.08G134700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2224.3e-07116137223
                          EETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                           C+ Cgk F+r  nL+ H+r H
  Glyma.08G134700.1.p 116 FCEVCGKGFTRDANLRMHMRAH 137
                          6*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.16E-6113141No hitNo description
SMARTSM003550.0018115137IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.508115142IPR007087Zinc finger, C2H2
PfamPF128747.1E-4116135No hitNo description
Gene3DG3DSA:3.30.160.606.3E-7117140IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280117137IPR007087Zinc finger, C2H2
SMARTSM0035521162195IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MPNATEQFSN INSIESLHVS LRNLSQLSTR MDSVQSFVSQ SIQSHTLLTH HQMNIVSNEI  60
LTAIRHVITN GVALVAASEN ALPLSETPTL DSPNNNDDDN VVELDAMELL AKHLHFCEVC  120
GKGFTRDANL RMHMRAHGDE FKTPEALANK ARGETRLKAT RFSCPLEGCN RNKTHKKFRA  180
LKSVFCLRNH FKRSHCPKTL LCERCRKKSF AVLSDLRSHV KQCRGEATWK CSCGTTFSRK  240
DKLLGHVALF EGHSPMLGEE RDTVVAAAAE GLPEGFFDGL DEFGFGSIQN NSSQEEHLAL  300
GLPTNNLDAW EFSFSNLI*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed at low levels in roots (e.g. root tips and lateral roots), leaves (e.g. at the edge of mature leaves, possibly in hydathodes, and in vascular bundles), flowers (e.g. floral filaments), stems, siliques and cotyledons. {ECO:0000269|PubMed:23935008}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in aluminum tolerance. {ECO:0000250}.
UniProtProbable transcription factor. Together with STOP1, plays a critical role in tolerance to major stress factors in acid soils such as proton H(+) and aluminum ion Al(3+). Required for the expression of genes in response to acidic stress (e.g. ALMT1 and MATE), and Al-activated citrate exudation. {ECO:0000269|PubMed:23935008}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.08G134700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003532820.10.0protein SENSITIVE TO PROTON RHIZOTOXICITY 2
SwissprotQ0WT242e-66STOP2_ARATH; Protein SENSITIVE TO PROTON RHIZOTOXICITY 2
SwissprotQ943I64e-66STOP1_ORYSJ; Zinc finger protein STOP1 homolog
TrEMBLI1KT050.0I1KT05_SOYBN; Uncharacterized protein
STRINGGLYMA08G14320.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68553150
Representative plantOGRP8301663
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22890.12e-68C2H2 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]