PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.08G126300.1.p
Common NameGLYMA_08G1263001, LOC100785164
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C2H2
Protein Properties Length: 373aa    MW: 42494.4 Da    PI: 6.6725
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.08G126300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.30.0005379101323
                          ET..TTTEEESSHHHHHHHHHHT CS
              zf-C2H2   3 Cp..dCgksFsrksnLkrHirtH 23 
                          C+   Cgk+F +   L++H   H
  Glyma.08G126300.1.p  79 CSydGCGKTFIDAGALRKHSHIH 101
                          78889**************7766 PP
2zf-C2H216.42.5e-05106130123
                          EEET..TTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                          y+C+   Cgk F ++s LkrH   H
  Glyma.08G126300.1.p 106 YVCHydGCGKKFLDSSKLKRHFLIH 130
                          9********************8877 PP
3zf-C2H221.75.3e-07136160123
                          EEET..TTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                          ++Cp   Cgk Fs   nL++H++tH
  Glyma.08G126300.1.p 136 FVCPheGCGKAFSLDFNLRSHMKTH 160
                          89**********************9 PP
4zf-C2H217.89.4e-06166190123
                          EEET..TTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                          + Cp  dCgk++ + + Lk+Hi +H
  Glyma.08G126300.1.p 166 HICPypDCGKRYAHEYKLKNHIASH 190
                          679999*****************96 PP
5zf-C2H212.60.00041231256123
                          EEET..TTTEEESSHHHHHHHHHH.T CS
              zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                          y Cp   C k + + + L+ H+++ H
  Glyma.08G126300.1.p 231 YACPydGCEKAYIHEYKLRLHLKReH 256
                          89*********************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.3E-1372103IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.78377106IPR007087Zinc finger, C2H2
SMARTSM003550.002877101IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028079101IPR007087Zinc finger, C2H2
SuperFamilySSF576671.97E-880130No hitNo description
Gene3DG3DSA:3.30.160.606.3E-14104126IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015713.921106135IPR007087Zinc finger, C2H2
SMARTSM003550.0019106130IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280108130IPR007087Zinc finger, C2H2
SuperFamilySSF576676.86E-14117169No hitNo description
Gene3DG3DSA:3.30.160.603.5E-20127160IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003553.1E-4136160IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.695136165IPR007087Zinc finger, C2H2
PROSITE patternPS000280138160IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.4E-9161192IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.494166195IPR007087Zinc finger, C2H2
SMARTSM003550.0028166190IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280168191IPR007087Zinc finger, C2H2
SuperFamilySSF576672.01E-5226254No hitNo description
Gene3DG3DSA:3.30.160.606.3E-9227253IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.349231261IPR007087Zinc finger, C2H2
SMARTSM003550.009231256IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280233256IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    Send to blast
MEIHYSNSYF ERRPILKSKA PAVKWVKEWV PQDLVTTGGK CMILKWVTED TLKTLKEKVK  60
EPSVPEPEPE PTTEVLFLCS YDGCGKTFID AGALRKHSHI HGERQYVCHY DGCGKKFLDS  120
SKLKRHFLIH TGERDFVCPH EGCGKAFSLD FNLRSHMKTH SQENYHICPY PDCGKRYAHE  180
YKLKNHIASH HEKQNAPLDV AKYTTPPPEK QTKTSKPSGG AYGSASSDRP YACPYDGCEK  240
AYIHEYKLRL HLKREHPGLM ADENAEHAQA NVGNEMDEAS DHDAYVAKRS NGKIQKQSKP  300
KPNLKLPPSK IAKRKVSTPT LTVNKNSWPV KDEPFDEEDS EETEEDRDNV EDGWRYAGGN  360
NEDDDEETEY ED*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ubd_C2e-35791958122PROTEIN (YY1 ZINC FINGER DOMAIN)
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.279690.0flower| hypocotyl| leaf| root
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Rapidly induced following seed germination, especially in tender cotyledons. {ECO:0000269|PubMed:26961720}.
UniprotTISSUE SPECIFICITY: Mostly expressed in flowers, to a lower extent in seedlings, stems and leaves, and, at low levels, in roots and senescent leaves. {ECO:0000269|PubMed:26961720}.
Functional Description ? help Back to Top
Source Description
UniProtDual-function transcription factor with both repression and activation activities. Binds to 5'-CCATATT-3' motif in target gene promoters (e.g. ABR1) (PubMed:26961720). Binds also to G-rich DNA motif 5'-GGGGGCAGTGG-3' (PubMed:22508367). Regulates the expression of genes involved in diverse cellular pathways, including glucose metabolism, photosynthesis, phototropism and stress response (e.g. salt, drought and osmotic stress) (PubMed:22508367, PubMed:26961720). Regulates plant immunity, especially during necrotrophic fungal infection (e.g. B.cinerea) (PubMed:24451981). Binds to ABR1 promoter and promotes its expression, thus negatively regulating the abscisic acid (ABA) signaling pathway. Represses ABA- and salt-responsive genes expression (PubMed:26961720). {ECO:0000269|PubMed:22508367, ECO:0000269|PubMed:24451981, ECO:0000269|PubMed:26961720}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.08G126300.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) in an ABI1- and ABI4-dependent manner. Stimulated by stress conditions including high salt, osmotic stress (e.g. mannitol) and dehydration. May be induced by ABI4 but repressed by ABR1. Repressed by darkness but induced by light. {ECO:0000269|PubMed:26961720}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0962050.0BT096205.1 Soybean clone JCVI-FLGm-20D17 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006585217.10.0zinc finger transcription factor YY1 isoform X1
SwissprotQ2V3L31e-150YY1_ARATH; Zinc finger transcription factor YY1
TrEMBLK7L6A10.0K7L6A1_SOYBN; Uncharacterized protein
STRINGGLYMA08G13310.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF56493354
Representative plantOGRP38561626
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G06634.11e-135C2H2 family protein
Publications ? help Back to Top
  1. Kumekawa N,Hosouchi T,Tsuruoka H,Kotani H
    The size and sequence organization of the centromeric region of Arabidopsis thaliana chromosome 4.
    DNA Res., 2001. 8(6): p. 285-90
    [PMID:11853315]
  2. Li T,Wu XY,Li H,Song JH,Liu JY
    A Dual-Function Transcription Factor, AtYY1, Is a Novel Negative Regulator of the Arabidopsis ABA Response Network.
    Mol Plant, 2016. 9(5): p. 650-661
    [PMID:26961720]
  3. Wu XY,Li T
    A Casein Kinase II Phosphorylation Site in AtYY1 Affects Its Activity, Stability, and Function in the ABA Response.
    Front Plant Sci, 2017. 8: p. 323
    [PMID:28348572]