PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.07G192000.1.p
Common NameGLYMA_07G192000, LOC100793085
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB_related
Protein Properties Length: 503aa    MW: 55570.3 Da    PI: 9.8107
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.07G192000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.23.2e-07337338
                         SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HH CS
      Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlk 38
                          W+t+ ++ll  av ++G ++W+ Ia+++  +Rt  
  Glyma.07G192000.1.p  3 TWSTWQELLLGGAVSRHGIRDWTVIAAELK-TRTVS 37
                         7****************************9.***76 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd001678.15E-4353No hitNo description
Gene3DG3DSA:1.20.920.102.1E-16254360IPR001487Bromodomain
SMARTSM002974.0E-17257361IPR001487Bromodomain
SuperFamilySSF473703.92E-18260362IPR001487Bromodomain
PfamPF004396.3E-11265345IPR001487Bromodomain
PROSITE profilePS500149.78272342IPR001487Bromodomain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 503 aa     Download sequence    Send to blast
MVTWSTWQEL LLGGAVSRHG IRDWTVIAAE LKTRTVSPCI FTPEVCKAKY VELQQQYPGG  60
CTSWFEELKK KRVAELKKDL ELSEEVIGSL ESKLETLQAG RDEKRDDCHV DNGSAEPELH  120
VPSQKLDRVD TSAKEMSKDG LSAGSFTHET KTNWTHECQV PATSCEYVRT KPEVSASTEQ  180
EKVLNVDKST HTVYEGQGGC LKKPRGKRKR KDCGRSINEV SARESDFSAD VCKESSISNC  240
GEIVKSSGMN EENANLKKAG IKDLMEVLDS FLTVQGASAF SYKHDSQKRG KYEQLIRQHM  300
DFETIKSRIC NGTIKSVVEL LRDLLLLSNN ALAFYSKNTR EYKTALQLRD LVIKTLTEKL  360
ECASTSPVCD PSAKVRSTCF STSPMRDSSV KVRSICSTSL VHDPSVQVRS MRPGNRKIVA  420
KVAGGSCSAE RVSVGVKKAK KVDSLPAERV SAAVKKANKV ESPPSVESVK KAFGGRAKKV  480
GRESAGKRNA TPRNERKRRR AK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1495499RKRRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.07G192000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003528431.10.0uncharacterized protein LOC100793085
RefseqXP_028240981.10.0uncharacterized protein LOC114419502
TrEMBLA0A0B2PHW40.0A0A0B2PHW4_GLYSO; Uncharacterized protein
TrEMBLI1KLF30.0I1KLF3_SOYBN; Uncharacterized protein
STRINGGLYMA07G31120.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF63041723
Representative plantOGRP829569
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42150.16e-27DNA-binding bromodomain-containing protein