PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.06G143600.1.p | ||||||||
Common Name | LOC102663307 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | MYB_related | ||||||||
Protein Properties | Length: 221aa MW: 24759 Da PI: 10.1671 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 40.1 | 8.6e-13 | 62 | 104 | 1 | 43 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksr 43 + +WT E+el++ + ++G+g+W++Iar++ +++t+ q++s+ Glyma.06G143600.1.p 62 KEPWTHREHELFLMGLIKYGKGHWSKIARHFLLNKTPQQVQSY 104 679*************************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 10.833 | 60 | 113 | IPR017884 | SANT domain |
SMART | SM00717 | 9.6E-9 | 61 | 111 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.5E-11 | 62 | 103 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 2.4E-9 | 62 | 104 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.15E-10 | 64 | 112 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.54E-10 | 64 | 104 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 221 aa Download sequence Send to blast |
MACTNPNQPQ TSLWRAASRH TNEHSQIATT FQPSMQLQRV ATVLEPVPES ITCMFPHGAR 60 LKEPWTHREH ELFLMGLIKY GKGHWSKIAR HFLLNKTPQQ VQSYGASFFR NLPSTHLHGF 120 RRRKPSYSTS SLMSKNNNLM AASASTTSYF MPMIVNEPQQ THMFFPENAP LNFLLAPSHG 180 EASSSNNNTT MYGFQMQTSG ARTSMNASAN GEVDLELRLG * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.06G143600.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006581720.1 | 1e-164 | transcription factor MYB1R1 | ||||
Refseq | XP_028234254.1 | 1e-164 | transcription factor MYB1R1-like | ||||
TrEMBL | A0A0B2QW66 | 1e-163 | A0A0B2QW66_GLYSO; Transcription factor MYB1R1 | ||||
TrEMBL | A0A0R0JGX7 | 1e-163 | A0A0R0JGX7_SOYBN; Uncharacterized protein | ||||
TrEMBL | A0A445K9L4 | 1e-163 | A0A445K9L4_GLYSO; Transcription factor MYBS1 | ||||
STRING | GLYMA06G14875.1 | 1e-163 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF14942 | 6 | 12 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G11280.2 | 1e-14 | MYB family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.06G143600.1.p |
Entrez Gene | 102663307 |