PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Glyma.06G125600.1.p | ||||||||
Common Name | GLYMA_06G125600, Glyma06g13090.1, LOC100812027 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
|
||||||||
Family | WRKY | ||||||||
Protein Properties | Length: 365aa MW: 40697.4 Da PI: 6.0855 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 93.3 | 1.8e-29 | 126 | 187 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK++ g+ +pr+YYrCt++ gC+++k+v+rs+edp+++eitY+g+H+++ Glyma.06G125600.1.p 126 LDDGYSWRKYGQKDILGALYPRGYYRCTHRnvqGCMATKQVQRSDEDPTIFEITYRGKHTCT 187 59***************************98999**************************96 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50811 | 23.87 | 121 | 189 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 1.8E-29 | 122 | 187 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.48E-26 | 125 | 188 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.0E-41 | 126 | 188 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.5E-27 | 127 | 186 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 365 aa Download sequence Send to blast |
MDHMGDPKSI IHELLQGLEL ARQLQVHLHM PSSSQETRDL LIQKIISTFE KVLEMVKWKG 60 PVPAGESSQH PLGAALIRMS DSPLSSEDSD RDLKDQDPNA FKKRNTLPRW TKQIRVTPGM 120 GVEGPLDDGY SWRKYGQKDI LGALYPRGYY RCTHRNVQGC MATKQVQRSD EDPTIFEITY 180 RGKHTCTVAN NVGSSSPIPL ENQEPSLNNT NIPQHQHQQN ILQSHEQQQN ELLLSLRKGL 240 RVQTENLDSP EQPLVPFRFP LSTNIKNESH VFPSPVLENF TSPSYVSPAA SGIGHFSVSP 300 SGVVNSFEGN PNLANSESQI NDMIPATTTT SAAPNSSTVG LEFPFDQFEF DGQNFTFDNP 360 RFFS* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6ir8_A | 3e-20 | 126 | 186 | 8 | 68 | OsWRKY45 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Gma.12112 | 0.0 | flower| leaf |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Glyma.06G125600.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | KT031232 | 0.0 | KT031232.1 Glycine max clone HN_CCL_107 WRKY transcription factor (Glyma06g13090.1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | NP_001304644.1 | 0.0 | probable WRKY transcription factor 53 | ||||
TrEMBL | I1KAM9 | 0.0 | I1KAM9_SOYBN; WRKY transcription factor | ||||
STRING | GLYMA06G13090.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF493 | 34 | 157 | Representative plant | OGRP14 | 17 | 875 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G24110.1 | 1e-51 | WRKY DNA-binding protein 30 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Glyma.06G125600.1.p |
Entrez Gene | 100812027 |
Publications ? help Back to Top | |||
---|---|---|---|
|