PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.06G106500.1.p
Common NameGLYMA_06G106500
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family LBD
Protein Properties Length: 205aa    MW: 22386.3 Da    PI: 8.2722
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.06G106500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26091.21.2e-288961100
               DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 
                          +CaaCk++rrkC+++Cv+apyfp ++p+           +nv kll++l+  +reda++sl+yeAear+rdPvyG+vg+i+ lq++l+ql
  Glyma.06G106500.1.p   8 PCAACKIQRRKCTQECVFAPYFPPDNPQ-----------RNVAKLLNELNAAQREDAVKSLAYEAEARLRDPVYGCVGLISILQHRLKQL 86 
                          7*************************87...........599************************************************ PP

               DUF260  91 kaelallkee 100
                          ++el+++k+e
  Glyma.06G106500.1.p  87 QNELHHAKKE 96 
                          *****99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089116.927797IPR004883Lateral organ boundaries, LOB
PfamPF031954.8E-28894IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    Send to blast
MSSSSNSPCA ACKIQRRKCT QECVFAPYFP PDNPQRNVAK LLNELNAAQR EDAVKSLAYE  60
AEARLRDPVY GCVGLISILQ HRLKQLQNEL HHAKKELASH IGSHTMLPPA PSLLPPEQQP  120
RTFSLFPFKP ASTHQHDLFG FHDDGGASSA SHAGGFNSHL AAVFSPSPAV DHAFSHAPMQ  180
SLTLPHHQHL MRSPMQPKPQ TDPA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A8e-3641007114LOB family transfactor Ramosa2.1
5ly0_B8e-3641007114LOB family transfactor Ramosa2.1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in trichomes, at the base of many lateral organs, including branching points of the inflorescence and floral organs and in the distal part of the pistil at stages when style and stigma start to develop. Also detected in pedicels and at the base of petals and sepals. {ECO:0000269|PubMed:15821980}.
Functional Description ? help Back to Top
Source Description
UniProtControls the proximal-distal patterning in petals and the adaxial-abaxial determination of leaves. Involved in the repression of the homeobox gene BP. {ECO:0000269|PubMed:12787254, ECO:0000269|PubMed:15821980}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.06G106500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006581559.11e-136LOB domain-containing protein 36
SwissprotQ9FKZ33e-51LBD36_ARATH; LOB domain-containing protein 36
TrEMBLA0A0R0JEY41e-147A0A0R0JEY4_SOYBN; Uncharacterized protein
STRINGGLYMA06G11181.11e-136(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23533484
Representative plantOGRP6016318
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66870.12e-53ASYMMETRIC LEAVES 2-like 1
Publications ? help Back to Top
  1. Kim M,Kim MJ,Pandey S,Kim J
    Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development.
    Plant Cell Physiol., 2016. 57(11): p. 2291-2299
    [PMID:27519310]
  2. Wang Z,Wang Y,Kohalmi SE,Amyot L,Hannoufa A
    SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 2 controls floral organ development and plant fertility by activating ASYMMETRIC LEAVES 2 in Arabidopsis thaliana.
    Plant Mol. Biol., 2016. 92(6): p. 661-674
    [PMID:27605094]