PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.06G027000.1.p | ||||||||
Common Name | GLYMA_06G027000, LOC100794842 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | DBB | ||||||||
Protein Properties | Length: 246aa MW: 27171.6 Da PI: 6.5814 | ||||||||
Description | DBB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 23.5 | 1.1e-07 | 4 | 43 | 5 | 38 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38 C+ +++++++lfC+ ++ lC+ C H+ H+ Glyma.06G027000.1.p 4 QCDVCNKQQASLFCTADEAALCDGCDHRVHHAnklaskHQ 43 7***************************964446666676 PP | |||||||
2 | zf-B_box | 22.5 | 2.3e-07 | 56 | 95 | 4 | 37 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......H 37 + C+ ++e ++ fC++++ lC++C + H+ H Glyma.06G027000.1.p 56 PLCDVCQERRAFVFCQQDRAILCKECDVPVHSAndltknH 95 57**************************999555555556 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 10.964 | 1 | 47 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.84E-6 | 3 | 47 | No hit | No description |
Pfam | PF00643 | 8.4E-6 | 4 | 43 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 3.9E-7 | 4 | 47 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 9.627 | 53 | 100 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 1.4E-14 | 53 | 100 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.13E-9 | 56 | 100 | No hit | No description |
Pfam | PF00643 | 4.8E-6 | 56 | 96 | IPR000315 | B-box-type zinc finger |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 246 aa Download sequence Send to blast |
MKIQCDVCNK QQASLFCTAD EAALCDGCDH RVHHANKLAS KHQRFSLSHP SAKHFPLCDV 60 CQERRAFVFC QQDRAILCKE CDVPVHSAND LTKNHNRFLL TGIKFSALDS PSTPPKPAGG 120 NSLTNQQPQQ QTGFTGSSIS EYLINTIPGM EFEDFLDSHS LPFACSKNSD DMMLSMFGEG 180 NMVSFSAGGI WVPQAPSSVQ MDQQSGYKDT WETSIRSSFG DDSLLVPQMT PPSNVFNNKR 240 SRLLW* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.44981 | 1e-148 | flower| root |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that acts as positive regulator of seedling photomorphogenesis (PubMed:17965270). Acts downstream of COP1 and play an important role in early and long-term adjustment of the shade avoidance syndrome (SAS) responses in natural environments (PubMed:21070414). {ECO:0000269|PubMed:17965270, ECO:0000269|PubMed:21070414}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.06G027000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003527799.1 | 0.0 | B-box zinc finger protein 21 | ||||
Refseq | XP_028234730.1 | 0.0 | B-box zinc finger protein 21-like | ||||
Swissprot | Q9LQZ7 | 1e-60 | BBX21_ARATH; B-box zinc finger protein 21 | ||||
TrEMBL | A0A0R4J3G1 | 0.0 | A0A0R4J3G1_SOYBN; Uncharacterized protein | ||||
TrEMBL | A0A445K3X7 | 0.0 | A0A445K3X7_GLYSO; B-box zinc finger protein 21 | ||||
STRING | GLYMA06G02970.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1448 | 34 | 94 | Representative plant | OGRP2984 | 11 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75540.1 | 6e-63 | salt tolerance homolog2 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.06G027000.1.p |
Entrez Gene | 100794842 |