PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.06G009100.1.p
Common NameGLYMA_06G009100, LOC100786372
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family DBB
Protein Properties Length: 234aa    MW: 26123.2 Da    PI: 6.946
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.06G009100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box24.74.7e-08442537
             zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......H 37
                          C+ +++ e++ fC  ++  lC++C  ++H+       H
  Glyma.06G009100.1.p  4 QCDVCDKVEASVFCPADEAALCHSCDRTIHRAnklatkH 42
                         7******99*********************765555555 PP
2zf-B_box30.29.2e-105692438
             zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg..Ht 38
                         + C+ ++e ++ lfC++++ llC++C + +H+   Ht
  Glyma.06G009100.1.p 56 PLCDICQERRAYLFCQEDRALLCRECDVPIHRAneHT 92
                         68*****************************768865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.997147IPR000315B-box-type zinc finger
CDDcd000214.10E-6347No hitNo description
SMARTSM003361.2E-6447IPR000315B-box-type zinc finger
PfamPF006431.6E-5442IPR000315B-box-type zinc finger
PROSITE profilePS5011910.26753100IPR000315B-box-type zinc finger
SMARTSM003367.4E-1553100IPR000315B-box-type zinc finger
CDDcd000211.12E-956100No hitNo description
PfamPF006431.8E-85692IPR000315B-box-type zinc finger
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MKIQCDVCDK VEASVFCPAD EAALCHSCDR TIHRANKLAT KHARFSLHYP TSKDFPLCDI  60
CQERRAYLFC QEDRALLCRE CDVPIHRANE HTQKHNRFLL TGVKLSGTCL DPASSSTNYT  120
NNNRVTGSEG RNDARSRMNR PRSSVSNEEN ASNSSCKVED NVASDTGSIS TSSISEYLIE  180
TIPGYCFEDL LDASFAPNGF CKKQNFDHPW AFQDQKRTSG DTMAVPFLKL VIH*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that acts as positive regulator of seedling photomorphogenesis (PubMed:17965270). Acts downstream of COP1 and play an important role in early and long-term adjustment of the shade avoidance syndrome (SAS) responses in natural environments (PubMed:21070414). {ECO:0000269|PubMed:17965270, ECO:0000269|PubMed:21070414}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.06G009100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006581111.11e-175B-box zinc finger protein 20 isoform X1
RefseqXP_028234534.11e-175B-box zinc finger protein 20-like isoform X1
SwissprotQ9LQZ71e-61BBX21_ARATH; B-box zinc finger protein 21
TrEMBLA0A0R0JI421e-174A0A0R0JI42_SOYBN; Uncharacterized protein
TrEMBLA0A445K2Z61e-174A0A445K2Z6_GLYSO; B-box zinc finger protein 21
STRINGGLYMA06G01140.11e-175(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14483494
Representative plantOGRP29841130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75540.12e-58salt tolerance homolog2
Publications ? help Back to Top
  1. Xu D, et al.
    BBX21, an Arabidopsis B-box protein, directly activates HY5 and is targeted by COP1 for 26S proteasome-mediated degradation.
    Proc. Natl. Acad. Sci. U.S.A., 2016. 113(27): p. 7655-60
    [PMID:27325768]
  2. Xu DB, et al.
    The G-Protein Ī² Subunit AGB1 Promotes Hypocotyl Elongation through Inhibiting Transcription Activation Function of BBX21 inĀ Arabidopsis.
    Mol Plant, 2017. 10(9): p. 1206-1223
    [PMID:28827171]
  3. Xu D,Jiang Y,Li J,Holm M,Deng XW
    The B-Box Domain Protein BBX21 Promotes Photomorphogenesis.
    Plant Physiol., 2018. 176(3): p. 2365-2375
    [PMID:29259103]
  4. Job N,Yadukrishnan P,Bursch K,Datta S,Johansson H
    Two B-Box Proteins Regulate Photomorphogenesis by Oppositely Modulating HY5 through their Diverse C-Terminal Domains.
    Plant Physiol., 2018. 176(4): p. 2963-2976
    [PMID:29439209]
  5. Crocco CD,Ocampo GG,Ploschuk EL,Mantese A,Botto JF
    Heterologous Expression of AtBBX21 Enhances the Rate of Photosynthesis and Alleviates Photoinhibition in Solanumtuberosum.
    Plant Physiol., 2018. 177(1): p. 369-380
    [PMID:29555784]
  6. Kang X, et al.
    HRB2 and BBX21 interaction modulates Arabidopsis ABI5 locus and stomatal aperture.
    Plant Cell Environ., 2018. 41(8): p. 1912-1925
    [PMID:29748960]