PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.05G115400.1.p
Common NameGLYMA_05G115400
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ARR-B
Protein Properties Length: 304aa    MW: 34430.5 Da    PI: 6.6001
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.05G115400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like231.8e-072062312651
              G2-like  26 kAtPktilelmkvkgLtlehvkSHLQ 51 
                          +A Pk+i+e+m+++ L +e+v+SHLQ
  Glyma.05G115400.1.p 206 EAKPKRIVEAMNIPALIREQVASHLQ 231
                          589*********************** PP
2Response_reg47.21.2e-16191241106
                          EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHH CS
         Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedale 88 
                          vl vd + ++++++++++ + +y ++ + +d++ al++++ek+  +D+il+ + mp  d +e+l++ + e  ++p+i+++  ++++++ +
  Glyma.05G115400.1.p  19 VLAVDHDTTILDVIKKMCFRCHY-RAVTYSDASLALNYVREKKdcIDVILIEVHMPYGDSYEFLQHVTVET-NIPVIMMSLDDAKSTVMK 106
                          799********************.***************99999***********************9988.9***************** PP

                          HHHTTESEEEESS--HHH CS
         Response_reg  89 alkaGakdflsKpfdpee 106
                          a+  Ga d+  Kp ++++
  Glyma.05G115400.1.p 107 AIIDGACDYRIKPLHENQ 124
                          *************98877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521721.85E-2216143IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23003.9E-2516134No hitNo description
SMARTSM004482.1E-1217129IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011029.21918133IPR001789Signal transduction response regulator, receiver domain
PfamPF000723.4E-1219125IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.49E-1320133No hitNo description
Gene3DG3DSA:1.10.10.102.4E-4135212IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.608.7E-6213232IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0005622Cellular Componentintracellular
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MGTYPTEKVF FQFPAGLRVL AVDHDTTILD VIKKMCFRCH YRAVTYSDAS LALNYVREKK  60
DCIDVILIEV HMPYGDSYEF LQHVTVETNI PVIMMSLDDA KSTVMKAIID GACDYRIKPL  120
HENQFKIMWK HVARKLWSKN QLPKKEDSEY VASYVLDSTV MDPEKIGSNF KDSDSYEPGD  180
SFAPPAKKPR VRCMINSSPF VFLLVEAKPK RIVEAMNIPA LIREQVASHL QNEKALQNYI  240
ESKGREGAYG RFDSIAFGDT SHVLYAALHP EGLTSNVTPR EEDESFPSIT KCSNNVKSEF  300
LIL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.05G115400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006580820.10.0two-component response regulator ORR21
RefseqXP_028230825.10.0two-component response regulator ORR21-like
TrEMBLA0A0R0JU680.0A0A0R0JU68_SOYBN; Uncharacterized protein
TrEMBLA0A445KMS30.0A0A445KMS3_GLYSO; Two-component response regulator ORR24
STRINGGLYMA19G06751.14e-71(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14524517
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01760.12e-42response regulator 14