PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Glyma.05G062100.1.p | ||||||||
Common Name | GLYMA_05G062100, LOC100101914 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 231aa MW: 25121.7 Da PI: 5.348 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 54.9 | 2.2e-17 | 58 | 107 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr + +g+Wv+eIr+p++ + r++lg+f t+++Aa+a++ a++ ++g Glyma.05G062100.1.p 58 TYRGVRMRQ-WGKWVSEIREPRK---KSRIWLGTFPTPDMAARAHDVAALTIKG 107 69****998.**********843...6**********************99876 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 3.6E-21 | 58 | 116 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 1.9E-36 | 58 | 121 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.0E-31 | 58 | 116 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.024 | 58 | 115 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 9.7E-12 | 58 | 107 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.6E-10 | 59 | 70 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.45E-30 | 59 | 117 | No hit | No description |
PRINTS | PR00367 | 6.6E-10 | 81 | 97 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 231 aa Download sequence Send to blast |
MVMEESNPLD NEVQPTTSSS SFTITTPSTS SSSSIEEATN TTKEKKKKAN SNEGKHPTYR 60 GVRMRQWGKW VSEIREPRKK SRIWLGTFPT PDMAARAHDV AALTIKGSSA YLNFPELADE 120 LPRPASTSPK DIQAAAAKAA ALDFGHRSHD AESELSRAVS SSILTQASSS SSNSSSLKGV 180 DDTFLDLPDL SLDLSHGADE FHYSSAWLVA GAEHIELGFR LEDPFLWESY * |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 5e-17 | 56 | 115 | 12 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Gma.25422 | 0.0 | hypocotyl| root |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Glyma.05G062100.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | EF551166 | 0.0 | EF551166.1 Glycine max dehydration-responsive element binding protein 6 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | NP_001235341.1 | 1e-168 | dehydration-responsive element binding protein 6 | ||||
Refseq | XP_028231800.1 | 1e-168 | ethylene-responsive transcription factor ERF039-like | ||||
Swissprot | Q8LBQ7 | 3e-58 | ERF34_ARATH; Ethylene-responsive transcription factor ERF034 | ||||
TrEMBL | A0A445KKK0 | 1e-166 | A0A445KKK0_GLYSO; Ethylene-responsive transcription factor ERF034 | ||||
TrEMBL | A5JNJ5 | 1e-166 | A5JNJ5_SOYBN; Dehydration-responsive element binding protein 6 | ||||
STRING | GLYMA05G04920.1 | 1e-167 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF192 | 34 | 263 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G11590.1 | 1e-46 | ERF family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Glyma.05G062100.1.p |
Entrez Gene | 100101914 |
Publications ? help Back to Top | |||
---|---|---|---|
|