PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.05G008400.1.p
Common NameGLYMA_05G008400, LOC100780649
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C3H
Protein Properties Length: 346aa    MW: 38659.4 Da    PI: 7.1242
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.05G008400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH29.51.3e-0984108126
                          --S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                          +kt++C  f++ G C+ G++C+FaHg
  Glyma.05G008400.1.p  84 FKTRICAKFRA-GACRNGENCNFAHG 108
                          69*********.*************9 PP
2zf-CCCH27.55.4e-09146169225
                          -S---SGGGGTS--TTTTT-SS-S CS
              zf-CCCH   2 ktelCrffartGtCkyGdrCkFaH 25 
                          k++lC+ ++ + +C+yGd+C+F H
  Glyma.05G008400.1.p 146 KMKLCKKYYNGEECPYGDKCSFLH 169
                          789*******66************ PP
3zf-CCCH421.5e-13228254127
                          --S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                          +kt+lC  f  tG+C++Gd C+FaHg+
  Glyma.05G008400.1.p 228 WKTKLCIKFETTGHCPFGDDCHFAHGQ 254
                          8************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.101.1E-1380116IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.23E-881114IPR000571Zinc finger, CCCH-type
SMARTSM003565.3E-683109IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.24483110IPR000571Zinc finger, CCCH-type
PfamPF006423.4E-784108IPR000571Zinc finger, CCCH-type
SMARTSM003560.0016144171IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.62E-7144171IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.901144172IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-6146169IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.2E-9146170IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.0E-17223259IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-10226258IPR000571Zinc finger, CCCH-type
SMARTSM003561.9E-6227254IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.375227255IPR000571Zinc finger, CCCH-type
PfamPF006428.2E-11228254IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0061158Biological Process3'-UTR-mediated mRNA destabilization
GO:0005829Cellular Componentcytosol
GO:0003730Molecular FunctionmRNA 3'-UTR binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MSFSDHIPSF MMSPPSFSTD TDAIEVRLQF PTNNESLEPH SPQDQPPSFK RARTCDSSLS  60
NAMACPPRMI QHPALNKGTS HIFFKTRICA KFRAGACRNG ENCNFAHGLE DMRQPPPNWQ  120
ELVGLRNEER PPTMGDWDDD QKIIHKMKLC KKYYNGEECP YGDKCSFLHE DPARFRDDSV  180
RYRESTAISI GTNGSPKSYG DASNNLESNR AVNTGLNVFR GNVKSTYWKT KLCIKFETTG  240
HCPFGDDCHF AHGQAELQVP GGRTEAEIPG AIPISTKATI PTLPRATSVS SNDAPPSHRA  300
SVLPANEEDQ DEKCLLKWKG HRKINRIYGD WLDDLPLVHD LPVAR*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.352180.0leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.05G008400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003524539.10.0zinc finger CCCH domain-containing protein 39 isoform X1
RefseqXP_028231146.10.0zinc finger CCCH domain-containing protein 39-like isoform X1
SwissprotQ9LT813e-95C3H39_ARATH; Zinc finger CCCH domain-containing protein 39
TrEMBLA0A445KI360.0A0A445KI36_GLYSO; Zinc finger CCCH domain-containing protein 39 isoform A
TrEMBLI1K1F10.0I1K1F1_SOYBN; Uncharacterized protein
STRINGGLYMA05G08450.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF83333345
Representative plantOGRP20451737
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19360.11e-88C3H family protein