PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.04G182600.1.p
Common NameGLYMA_04G182600, LOC100790403
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 191aa    MW: 21786.3 Da    PI: 9.972
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.04G182600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.46.1e-091868654
                         HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-.STCHHHHHHHHHHHHHH CS
                  HLH  6 nerErrRRdriNsafeeLrellPk.askapskK.lsKaeiLekAveYIksL 54
                         + +E++RR +++s  ++L +l+P+ +  a+sk  l   + L +A +YIk++
  Glyma.04G182600.1.p 18 KTIEKNRRIHMKSLCHQLSSLIPPnLKPAKSKLmLGQRDQLDLAARYIKHM 68
                         689*********************665666666899999***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000837.98E-51173No hitNo description
PROSITE profilePS508889.8261268IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.6E-81687IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.8E-91686IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.5E-61868IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006357Biological Processregulation of transcription from RNA polymerase II promoter
GO:0090575Cellular ComponentRNA polymerase II transcription factor complex
GO:0000977Molecular FunctionRNA polymerase II regulatory region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 191 aa     Download sequence    Send to blast
MKKRVASTST ESSKLDRKTI EKNRRIHMKS LCHQLSSLIP PNLKPAKSKL MLGQRDQLDL  60
AARYIKHMNE RIEKLKRQKE QVMSNNDDRK MFNNNVESKL PIVELRDLGS SIEVMLVSGL  120
NKAFMLYEVI SVLEEEGAEV VTASFSTVGD KIFYVVHAQV KISRVGVETT RAYNRLQEFI  180
APPEIWPEDV *
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.271490.0root
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.04G182600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003523076.11e-139transcription factor bHLH162
TrEMBLI1JX691e-137I1JX69_SOYBN; Uncharacterized protein
STRINGGLYMA04G35380.11e-138(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68492141
Representative plantOGRP13451147
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20970.11e-26bHLH family protein