PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.04G135400.1.p
Common NameGLYMA_04G135400, LOC100799917
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family Trihelix
Protein Properties Length: 365aa    MW: 40214.1 Da    PI: 10.2992
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.04G135400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix52.11.7e-1665149186
             trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                          +W++  v +L+ea++ ++ + +r+klk+++We+v+k++     +++  ++++qCk+k+e+++kry+ + ++  +      s++p++++l+
  Glyma.04G135400.1.p  65 EWSEGAVTTLLEAYEAKWVHRNRAKLKGHDWEDVAKHVsaraNSTKSPKTQTQCKNKIESMKKRYRSESATTADA-----SSWPLYSRLD 149
                          5*************************************87777777888999****************9999984.....57****9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138372.7E-2063150No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MEDNNNNNNK AEKQQDDSSH HPSLLLPKPN HSTINNIKED HHQSPRKLAI GGGGGGSGDR  60
LKRDEWSEGA VTTLLEAYEA KWVHRNRAKL KGHDWEDVAK HVSARANSTK SPKTQTQCKN  120
KIESMKKRYR SESATTADAS SWPLYSRLDV LLRGTGLISS SLPPPIAATA IAAPSQSPHA  180
TINNNQALVL LEPPSLAVLQ APPSVAPPPI AIAQNSHGPN GVERLLAKED GIGAKSSEQV  240
SNKNPMDSDS STPALYSKKD KVRCNKRKMK SENNNKRRRN NNNNNEDVEI AKSIRWLAEV  300
VVRSEQTRMD TMKEIERMRV EAEAKRGEME LKRTEIIANT QLEIARIFAS VNKGVDSSLR  360
IGRS*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.326160.0hypocotyl
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.04G135400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150401e-130AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003523957.10.0trihelix transcription factor ASIL2
RefseqXP_028228771.10.0trihelix transcription factor ASIL2-like
TrEMBLA0A0B2PG460.0A0A0B2PG46_GLYSO; Trihelix transcription factor ASIL2
TrEMBLK7KJY70.0K7KJY7_SOYBN; Uncharacterized protein
STRINGGLYMA04G17330.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49943350
Representative plantOGRP44091421
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54390.11e-97sequence-specific DNA binding transcription factors