PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Glyma.04G078300.5.p | ||||||||
Common Name | GLYMA_04G078300, LOC780555 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
|
||||||||
Family | bZIP | ||||||||
Protein Properties | Length: 258aa MW: 28252.3 Da PI: 7.5058 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 43.6 | 6.5e-14 | 85 | 136 | 3 | 54 |
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkk 54 + kr rrk +NR +ArrsR+RK+a++ eLe v++L+ eN +L k+ ++ Glyma.04G078300.5.p 85 DMKRLRRKVSNRDSARRSRRRKQAQLSELELQVEKLKVENATLYKQFTDASQ 136 68*****************************************987665555 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 2.0E-12 | 83 | 147 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 11.059 | 85 | 148 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 4.2E-11 | 86 | 131 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 6.47E-10 | 87 | 136 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 7.0E-8 | 87 | 122 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 90 | 105 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.10 | 2.2E-4 | 123 | 157 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0071333 | Biological Process | cellular response to glucose stimulus | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 258 aa Download sequence Send to blast |
MTSFSACGLI DPHCSQNLTP MHSTITATID SQSTICATSN VGSPISANKP EGRENRTKGA 60 TSGSSEPSDE DDEAGACEQS TNPADMKRLR RKVSNRDSAR RSRRRKQAQL SELELQVEKL 120 KVENATLYKQ FTDASQHFRE ADTNNRVLKS DVEALRAKVK LAEDMVTRSS FTTLNYQLLQ 180 TQQHQMSTPP QLNTTNLRRM AHVSPTITVH GNDASYNGVT VGEQNSSALG NLDMTFNNIN 240 NGVMNNAMSC GTIWPLD* |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 89 | 105 | RRKVSNRDSARRSRRRK |
2 | 99 | 106 | RRSRRRKQ |
3 | 101 | 106 | SRRRKQ |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Gma.36043 | 0.0 | hypocotyl| pod| root| seed coat |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Present in silique vasculature and funiculi. In the anthers, restricted to the connective tissue at pre- and post-dehiscence stages and detected in the vascular tissue of the stamen filament. {ECO:0000269|PubMed:18841482}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, shoots, stems, young leaves, and flowers, mostly in vascular tissues (e.g. phloem). {ECO:0000269|PubMed:12657652, ECO:0000269|PubMed:18841482}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Glyma.04G078300.5.p |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Repressed by glucose. {ECO:0000269|PubMed:18841482}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | BT096669 | 0.0 | BT096669.1 Soybean clone JCVI-FLGm-21C7 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | NP_001345650.1 | 0.0 | bZIP transcription factor 61 | ||||
Refseq | XP_028228162.1 | 0.0 | basic leucine zipper 9-like isoform X1 | ||||
Refseq | XP_028228163.1 | 0.0 | basic leucine zipper 9-like isoform X2 | ||||
Swissprot | Q9FUD3 | 7e-60 | BZIP9_ARATH; Basic leucine zipper 9 | ||||
TrEMBL | A0A0R0KB07 | 0.0 | A0A0R0KB07_SOYBN; Uncharacterized protein | ||||
TrEMBL | A0A445KXF7 | 0.0 | A0A445KXF7_GLYSO; Basic leucine zipper 9 isoform B | ||||
TrEMBL | A0A445KY36 | 0.0 | A0A445KY36_GLYSO; Basic leucine zipper 9 isoform A | ||||
TrEMBL | I1JUQ2 | 0.0 | I1JUQ2_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA04G08290.3 | 0.0 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G24800.1 | 1e-38 | basic leucine zipper 9 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Glyma.04G078300.5.p |
Entrez Gene | 780555 |
Publications ? help Back to Top | |||
---|---|---|---|
|