PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.04G039300.4.p
Common NameGLYMA_04G039300
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bZIP
Protein Properties Length: 408aa    MW: 44060.4 Da    PI: 10.5905
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.04G039300.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_143.47.3e-14339383551
                          CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
               bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkelee 51 
                          +r+rr++kNRe+A rsR+RK+a++ eLe +v++L++eN++L+k+  +
  Glyma.04G039300.4.p 339 RRQRRMIKNRESAARSRARKQAYTMELEAEVAKLKEENQELQKK--Q 383
                          69**************************************9853..3 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003385.5E-12335393IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.185337382IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1703.0E-13339387No hitNo description
CDDcd147072.84E-26339392No hitNo description
SuperFamilySSF579591.63E-10339383No hitNo description
PfamPF001708.0E-12339382IPR004827Basic-leucine zipper domain
PROSITE patternPS000360342357IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0009738Biological Processabscisic acid-activated signaling pathway
GO:0010255Biological Processglucose mediated signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0000976Molecular Functiontranscription regulatory region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 408 aa     Download sequence    Send to blast
MNFKSFGNEA GGGGGRQAGN FSLTRQPSVY SLTFDEFMNS MGGSGKDFGS MNMDELLKNI  60
WTAEEVQTMA SAGVAADDGG AGVSHLQRQG SLTLPRTLSQ KTVDEVWKDI SKDHGGPNLA  120
QTQREPTLGE VTLEEFLVRA GVVREDAKPN ESVFVDLSRV GNNSGLGLGF QQRNKVAAAT  180
GLMGNRLNND PLVGLQPSAN LPLNVNGVRT SNQQPQMQSP QSQHQHQHQH QQQQQQIFPK  240
QSAMSYAAAQ MPQGMVRGGV VGLGDQGLSV QGGGIGMVGL APGSVHVATG SPAANQLSSG  300
DRIGKSNGDS SSVSPVPYVF NGSLRGRKNG GAVEKVIERR QRRMIKNRES AARSRARKQA  360
YTMELEAEVA KLKEENQELQ KKQVKEMMNL QREVKRRRLR RTQTGPW*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1394398KRRRL
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, leaves, flowers and siliques but not in seeds. {ECO:0000269|PubMed:11005831, ECO:0000269|PubMed:15361142, ECO:0000269|PubMed:16284313}.
Functional Description ? help Back to Top
Source Description
UniProtInvolved in ABA and stress responses and acts as a positive component of glucose signal transduction. Functions as transcriptional activator in the ABA-inducible expression of rd29B. Binds specifically to the ABA-responsive element (ABRE) of the rd29B gene promoter. {ECO:0000269|PubMed:11005831, ECO:0000269|PubMed:15361142, ECO:0000269|PubMed:16284313, ECO:0000269|PubMed:16463099}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00186DAPTransfer from AT1G45249Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.04G039300.4.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by drought, salt, abscisic acid (ABA), cold and glucose. {ECO:0000269|PubMed:10636868, ECO:0000269|PubMed:11005831, ECO:0000269|PubMed:15361142, ECO:0000269|PubMed:16284313, ECO:0000269|PubMed:16463099}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0311460.0KT031146.1 Glycine max clone HN_WYQ_35 BZIP transcription factor (Glyma04g04170.1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003523938.10.0bZIP transcription factor TRAB1
RefseqXP_006578027.10.0bZIP transcription factor TRAB1
RefseqXP_014629941.10.0bZIP transcription factor TRAB1
SwissprotQ9M7Q41e-114AI5L5_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 5
TrEMBLA0A0R0K9P40.0A0A0R0K9P4_SOYBN; Uncharacterized protein
STRINGGLYMA04G04170.10.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G45249.12e-91abscisic acid responsive elements-binding factor 2
Publications ? help Back to Top
  1. Gao S, et al.
    ABF2, ABF3, and ABF4 Promote ABA-Mediated Chlorophyll Degradation and Leaf Senescence by Transcriptional Activation of Chlorophyll Catabolic Genes and Senescence-Associated Genes in Arabidopsis.
    Mol Plant, 2016. 9(9): p. 1272-1285
    [PMID:27373216]
  2. Seok HY, et al.
    Arabidopsis AtNAP functions as a negative regulator via repression of AREB1 in salt stress response.
    Planta, 2017. 245(2): p. 329-341
    [PMID:27770200]