PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.04G027000.1.p | ||||||||
Common Name | GLYMA_04G027000, LOC100785978 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | DBB | ||||||||
Protein Properties | Length: 267aa MW: 29383 Da PI: 7.0562 | ||||||||
Description | DBB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 21 | 7e-07 | 4 | 43 | 5 | 38 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38 C+ ++++++++fC+ ++ lC+ C H+ H+ Glyma.04G027000.1.p 4 HCDVCNKHQASFFCTADEAALCDGCDHRVHHAnklaskHQ 43 7******99******************9964446666676 PP | |||||||
2 | zf-B_box | 24 | 8.1e-08 | 56 | 95 | 4 | 37 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......H 37 + C+ ++e ++ fC++++ lC++C + +H+ H Glyma.04G027000.1.p 56 PLCDVCQERRAFVFCQQDRAILCKECDVPIHSAndltknH 95 57*****************************655555555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 10.879 | 1 | 47 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.67E-6 | 3 | 47 | No hit | No description |
SMART | SM00336 | 1.7E-6 | 4 | 47 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 3.3E-5 | 4 | 43 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 9.6E-15 | 53 | 100 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 9.513 | 53 | 100 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 2.59E-9 | 56 | 100 | No hit | No description |
Pfam | PF00643 | 4.3E-6 | 56 | 96 | IPR000315 | B-box-type zinc finger |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009640 | Biological Process | photomorphogenesis | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0000989 | Molecular Function | transcription factor activity, transcription factor binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 267 aa Download sequence Send to blast |
MKIHCDVCNK HQASFFCTAD EAALCDGCDH RVHHANKLAS KHQRFSLTHP SAKHFPLCDV 60 CQERRAFVFC QQDRAILCKE CDVPIHSAND LTKNHSRFLL TGIKFSASAT PYDYSSPPPP 120 PPPPPPKRNP VLDSPSTPSP PKPGGNSLTN EEEPGFTGSS ISEYLINSIP GMKFEDFLDS 180 HSLPFACSKN SDDMLSLFGE GNMVSFSPGG FWVPQAPPSS VQMDRQSGYR ETREGSIRSS 240 FGDDNFIVPQ MSPPSNVSNK RSRLLW* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.44981 | 0.0 | flower| root |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that acts as positive regulator of seedling photomorphogenesis (PubMed:17965270). Acts downstream of COP1 and play an important role in early and long-term adjustment of the shade avoidance syndrome (SAS) responses in natural environments (PubMed:21070414). {ECO:0000269|PubMed:17965270, ECO:0000269|PubMed:21070414}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.04G027000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015035 | 3e-49 | AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003523557.1 | 0.0 | B-box zinc finger protein 21 isoform X1 | ||||
Refseq | XP_025983938.1 | 0.0 | B-box zinc finger protein 21 isoform X1 | ||||
Swissprot | Q9LQZ7 | 5e-65 | BBX21_ARATH; B-box zinc finger protein 21 | ||||
TrEMBL | I1JT58 | 0.0 | I1JT58_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA04G02960.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1448 | 34 | 94 | Representative plant | OGRP2984 | 11 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75540.1 | 6e-63 | salt tolerance homolog2 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.04G027000.1.p |
Entrez Gene | 100785978 |