PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.03G177500.1.p
Common NameGLYMA_03G177500, LOC100808212
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family AP2
Protein Properties Length: 460aa    MW: 50271.7 Da    PI: 6.7397
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.03G177500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.65.7e-17124173155
                  AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                          s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  Glyma.03G177500.1.p 124 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 173
                          78*******************......55************************997 PP
2AP2422.3e-13216266155
                  AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          s+y+GV+ +k  grW+A+   +     +k+++lg f+++ eAa+a+++a+ k +g
  Glyma.03G177500.1.p 216 SKYRGVTLHK-CGRWEARMGQF--L-GKKYIYLGLFDSELEAARAYDKAAIKCNG 266
                          89********.7******5553..2.26**********99**********99776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541714.97E-16124183IPR016177DNA-binding domain
PfamPF008475.2E-9124173IPR001471AP2/ERF domain
CDDcd000189.30E-12125183No hitNo description
SMARTSM003805.3E-33125187IPR001471AP2/ERF domain
PROSITE profilePS5103217.794125181IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.9E-17125182IPR001471AP2/ERF domain
CDDcd000182.49E-25216276No hitNo description
PfamPF008476.0E-9216266IPR001471AP2/ERF domain
SuperFamilySSF541711.18E-16216275IPR016177DNA-binding domain
PROSITE profilePS5103215.606217274IPR001471AP2/ERF domain
SMARTSM003801.3E-31217280IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.8E-15217274IPR001471AP2/ERF domain
PRINTSPR003674.7E-6218229IPR001471AP2/ERF domain
PRINTSPR003674.7E-6256276IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 460 aa     Download sequence    Send to blast
MLDLNLNADS ASDAQMESSG SFNSSVVNAA DTDDSCSYGD AVAYNFAILN TTTTATSDGP  60
PLAAAGESSV RTIQLFPAVE SGASPAWLDF SSKVDQNGAP QEQRIPPRQP PVKKSRRGPR  120
SRSSQYRGVT FYRRTGRWES HIWDCGKQVY LGGFDTAHAA ARAYDRAAIK FRGVDADINF  180
NVSDYDEDIK QMSNFTKEEF VHILRRQSTG FSRGSSKYRG VTLHKCGRWE ARMGQFLGKK  240
YIYLGLFDSE LEAARAYDKA AIKCNGREAV TNFEPSFYEG EVISQSDNED NKQSLDLNLG  300
LAPPSYSDGQ IKNTPSNGSG MITPHSWDNI PLDKRVMFEH SASRSLTVQP SHHGFSVASG  360
QHPSVWNGSN FFPIYEETAI EKRMEAAPVP NWAWQVKGPY GGATLTPPLS TAASSGFPST  420
ILPSAADTQI RFPNMTFLHS HFPPSITNSG TISPFFCGS*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.345420.0hypocotyl| leaf| root
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor (By similarity). Involved in spikelet transition. Together with SNB, controls synergistically inflorescence architecture and floral meristem establishment via the regulation of spatio-temporal expression of B- and E-function floral organ identity genes in the lodicules and of spikelet meristem genes. Prevents lemma and palea elongation as well as grain growth (By similarity). {ECO:0000250|UniProtKB:P47927, ECO:0000250|UniProtKB:Q84TB5}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.03G177500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150373e-96AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003520641.10.0floral homeotic protein APETALA 2
SwissprotB8AMA91e-103AP22_ORYSI; APETALA2-like protein 2
TrEMBLI1JPI90.0I1JPI9_SOYBN; Uncharacterized protein
STRINGGLYMA03G33470.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF105813041
Representative plantOGRP4971784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.31e-111related to AP2.7