PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.03G056900.1.p
Common NameGLYMA_03G056900, LOC100818384
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family Trihelix
Protein Properties Length: 274aa    MW: 32659.1 Da    PI: 9.3907
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.03G056900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix77.42.1e-2438120186
             trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                          +W+ qe+++ + +r e+++++ ++k++k+lWe +s++m+e+g++rs++qCk+kw+nl +ryk  +++e++    +++++p++++ +
  Glyma.03G056900.1.p  38 QWSIQETKEFLVIRAELDQTFMETKRNKQLWEVISNRMKEKGYHRSAEQCKCKWKNLVTRYKGFETMEQEA---TRQQFPFYNEFN 120
                          7********************************************************************96...45679**99865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd122032.38E-2237100No hitNo description
PfamPF138376.5E-2038122No hitNo description
PROSITE profilePS500907.3643995IPR017877Myb-like domain
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MEGTHHLRHL HQQQQQKQRV LPQSMSSVNV DVTDRFPQWS IQETKEFLVI RAELDQTFME  60
TKRNKQLWEV ISNRMKEKGY HRSAEQCKCK WKNLVTRYKG FETMEQEATR QQFPFYNEFN  120
AIFTARMQRM LWAEAGGGSK KNKAMTMQLS SDEEDGKEES TEAGSDRKKK KAKIVSGGGG  180
SLNNLKEILE DFMRQQMQIE AQWMVAFEAR ENERRLKEME WRQAMEVLEN ERIMMEERWR  240
EREEQRRIRE EARAEKRDAL ITALLNKLER QGM*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may play a role in the induction of CAM4 in response to pathogen and salt. {ECO:0000269|PubMed:15310827}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.03G056900.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt and infection with the bacterial pathogen P.syringae pv tomato. {ECO:0000269|PubMed:15310827}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150421e-176AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003522067.20.0trihelix transcription factor GT-3b
RefseqXP_028224508.10.0trihelix transcription factor GT-3b-like
SwissprotO804505e-69TGT3B_ARATH; Trihelix transcription factor GT-3b
TrEMBLA0A0B2SBM40.0A0A0B2SBM4_GLYSO; Trihelix transcription factor GT-3b
TrEMBLK7KD370.0K7KD37_SOYBN; Uncharacterized protein
STRINGGLYMA03G07590.40.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17813385
Representative plantOGRP22621535
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01380.15e-64Trihelix family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]