PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.03G052300.1.p | ||||||||
Common Name | GLYMA_03G052300 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | bHLH | ||||||||
Protein Properties | Length: 183aa MW: 20913.3 Da PI: 7.177 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 30.6 | 6.2e-10 | 51 | 91 | 9 | 54 |
HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r RR+ri ++f L++++P K++ +++Le+A++Y+k L Glyma.03G052300.1.p 51 ARERRHRISDRFKILQSMVPGG-----SKMDTVSMLEEAIQYVKFL 91 699*****************95.....5****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.453 | 42 | 91 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 6.67E-14 | 47 | 103 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.9E-12 | 48 | 96 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.71E-13 | 48 | 95 | No hit | No description |
SMART | SM00353 | 1.8E-12 | 48 | 97 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.7E-7 | 51 | 91 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 183 aa Download sequence Send to blast |
MDHHHTPSTN QTSSSQFSSS KPNQISNKEK KGVKKCKGVM RLSTDPQSVA ARERRHRISD 60 RFKILQSMVP GGSKMDTVSM LEEAIQYVKF LKTQIWLHQT MINFMDNDNY NINDNNESSS 120 LLYPNNDCCY FPSEHFVSPQ QNATFDYSNM QDLQHLQPLA AQCGFQGEDS NYFDASLKYW 180 PA* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.03G052300.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015042 | 9e-73 | AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025983833.1 | 1e-137 | transcription factor bHLH140-like | ||||
Swissprot | Q9M041 | 4e-32 | BH140_ARATH; Transcription factor bHLH140 | ||||
TrEMBL | K7KCZ5 | 1e-135 | K7KCZ5_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA03G06792.1 | 1e-136 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF7167 | 28 | 46 | Representative plant | OGRP8941 | 10 | 14 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G01310.1 | 2e-30 | APRATAXIN-like |
Link Out ? help Back to Top | |
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Phytozome | Glyma.03G052300.1.p |
Publications ? help Back to Top | |||
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