PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.02G293300.1.p
Common NameGLYMA_02G293300, LOC100801812
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C2H2
Protein Properties Length: 363aa    MW: 42118.6 Da    PI: 8.0756
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.02G293300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.41.3e-056485223
                         EETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
                         +C+ Cg +F+ + +L +H+++H
  Glyma.02G293300.1.p 64 SCEECGATFKKHAYLLQHMQSH 85
                         6*******************99 PP
2zf-C2H2188.1e-0691115123
                          EEET..TTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                          ++C   dC  s++rk++L+rH+  H
  Glyma.02G293300.1.p  91 FVCAvdDCQASYRRKDHLTRHLLQH 115
                          89*******************9887 PP
3zf-C2H214.50.0001120145123
                          EEET..TTTEEESSHHHHHHHHHH.T CS
              zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                          +kCp  +C+  Fs +sn+krH    H
  Glyma.02G293300.1.p 120 FKCPveNCNSEFSLQSNMKRHTEEiH 145
                          89*******************87766 PP
4zf-C2H219.72.2e-06161185123
                          EEET..TTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                          + Cp   Cgk+F+  s+L++H  +H
  Glyma.02G293300.1.p 161 HMCPeiGCGKVFRYASQLQKHEDSH 185
                          68*******************9888 PP
5zf-C2H216.72e-05252277123
                          EEET..TTTEEESSHHHHHHHHHH.T CS
              zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                          ++C+   C+ +FsrksnL +H +  H
  Glyma.02G293300.1.p 252 FQCEfkGCSCTFSRKSNLDKHKKAvH 277
                          89*******************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM00355321941IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.8081946IPR007087Zinc finger, C2H2
PROSITE profilePS5015713.3396390IPR007087Zinc finger, C2H2
SMARTSM003550.0166385IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.4E-86490IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS0002806585IPR007087Zinc finger, C2H2
SuperFamilySSF576671.28E-1071124No hitNo description
SMARTSM003550.01891115IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.7E-1091117IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.3991118IPR007087Zinc finger, C2H2
PROSITE patternPS00028093115IPR007087Zinc finger, C2H2
SuperFamilySSF576675.29E-6118146No hitNo description
Gene3DG3DSA:3.30.160.601.2E-5118146IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.029120145IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.201120150IPR007087Zinc finger, C2H2
PROSITE patternPS000280122145IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.8E-7156185IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576676.35E-5158187No hitNo description
SMARTSM003550.0014161185IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.907161190IPR007087Zinc finger, C2H2
PROSITE patternPS000280163185IPR007087Zinc finger, C2H2
SMARTSM003551.7193218IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280195218IPR007087Zinc finger, C2H2
SMARTSM0035530221242IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.4E-6233274IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.15E-8234290No hitNo description
SMARTSM003550.0042252277IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.799252282IPR007087Zinc finger, C2H2
PROSITE patternPS000280254277IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.600.001276306IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003559.7283309IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280285309IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008097Molecular Function5S rRNA binding
GO:0046872Molecular Functionmetal ion binding
GO:0080084Molecular Function5S rDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MCEAVEIEER PKYKDIRRYY CEYCGICRSK KTLITSHINL HHKEEYEKAR AERDPEAEAS  60
KSNSCEECGA TFKKHAYLLQ HMQSHSLERP FVCAVDDCQA SYRRKDHLTR HLLQHEGKIF  120
KCPVENCNSE FSLQSNMKRH TEEIHDDSST TTSSDKSHKQ HMCPEIGCGK VFRYASQLQK  180
HEDSHVNLES VDMVCLEPGC LKHFTNVQCL QAHVKSSHQY MTCDICGTKQ LKKNIKRHLR  240
SHEAEGSSSE TFQCEFKGCS CTFSRKSNLD KHKKAVHFNV KPFACGFTDC GMRFAYKHVR  300
DNHEKTAKHV FTLGDFEEAD EEFRSRPRGG RKRTCPTVEM LIRKRVTPPS QLEHWLFMQD  360
SE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tf6_A8e-156722019162PROTEIN (TRANSCRIPTION FACTOR IIIA)
1tf6_D8e-156722019162PROTEIN (TRANSCRIPTION FACTOR IIIA)
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.192880.0cotyledon| flower
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Both isoforms 1 and 2 transcripts are expressed in seedlings and both TFIIIA and TFIIIA-C are present at similar ratios in 10-day-old seedlings (at protein level). In correlation with the reorganization of 5S rDNA chromatin to a mature state, full-length isoform 1 protein TFIIIA with transcriptional activity accumulates and permits de novo transcription of 5S rRNA. Isoforms 1 and 2 transcripts accumulate in various tissues of the reproductive phase, including flowers and siliques, but only isoform 2 is present in mature seeds. In flowers, both TFIIIA and TFIIIA-C are present at similar ratios (at protein level). Very low amounts of TFIIIA are found in extracts from fresh siliques compared to TFIIIA-C. The amount of full-length TFIIIA protein progressively increases from fresh siliques to seeds concomitant with lower proportions of the shorter TFIIIA-C protein (at protein level) thus leading to 5S rRNA accumulation in the seed. {ECO:0000269|PubMed:22353599}.
UniprotTISSUE SPECIFICITY: Expressed in seedlings, flowers, siliques and seeds. {ECO:0000269|PubMed:22353599}.
Functional Description ? help Back to Top
Source Description
UniProtEssential protein (PubMed:22353599). Isoform 1 is a transcription activator the binds both 5S rDNA and 5S rRNA and stimulates the transcription of 5S rRNA gene (PubMed:12711688, PubMed:22353599). Isoform 1 regulates 5S rRNA levels during development (PubMed:22353599). {ECO:0000269|PubMed:12711688, ECO:0000269|PubMed:22353599}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00229DAPTransfer from AT1G72050Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.02G293300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003518529.10.0transcription factor IIIA
SwissprotQ84MZ41e-139TF3A_ARATH; Transcription factor IIIA
TrEMBLI1JJC20.0I1JJC2_SOYBN; Uncharacterized protein
STRINGGLYMA02G46270.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF30693370
Representative plantOGRP29811627
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72050.21e-108transcription factor IIIA